PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
80051-80100 / 86044 show all | |||||||||||||||
ckim-vqsr | INDEL | I16_PLUS | HG002complexvar | hetalt | 96.6468 | 94.0299 | 99.4135 | 66.8932 | 315 | 20 | 339 | 2 | 2 | 100.0000 | |
ckim-vqsr | INDEL | I16_PLUS | HG002complexvar | homalt | 98.8800 | 100.0000 | 97.7848 | 70.4673 | 309 | 0 | 309 | 7 | 7 | 100.0000 | |
ckim-vqsr | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
ckim-vqsr | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
ckim-vqsr | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-vqsr | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-vqsr | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
ckim-vqsr | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
ckim-vqsr | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-vqsr | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-vqsr | INDEL | D1_5 | HG002complexvar | * | 99.4499 | 99.1625 | 99.7391 | 58.6120 | 32441 | 274 | 32494 | 85 | 69 | 81.1765 | |
ckim-vqsr | INDEL | D1_5 | HG002complexvar | het | 99.6767 | 99.4799 | 99.8743 | 56.3731 | 20657 | 108 | 20661 | 26 | 12 | 46.1538 | |
ckim-vqsr | INDEL | D1_5 | HG002complexvar | hetalt | 92.5788 | 88.8314 | 96.6563 | 72.4212 | 1201 | 151 | 1243 | 43 | 43 | 100.0000 | |
ckim-vqsr | INDEL | D1_5 | HG002complexvar | homalt | 99.8538 | 99.8585 | 99.8491 | 60.1802 | 10583 | 15 | 10590 | 16 | 14 | 87.5000 | |
ckim-vqsr | INDEL | D6_15 | HG002complexvar | * | 98.0282 | 97.5292 | 98.5322 | 58.5722 | 5171 | 131 | 5169 | 77 | 70 | 90.9091 | |
ckim-vqsr | INDEL | D6_15 | HG002complexvar | het | 98.8682 | 98.6538 | 99.0835 | 59.5418 | 3078 | 42 | 3027 | 28 | 22 | 78.5714 | |
ckim-vqsr | INDEL | D6_15 | HG002complexvar | hetalt | 93.7593 | 91.3129 | 96.3403 | 47.3985 | 925 | 88 | 974 | 37 | 37 | 100.0000 | |
ckim-vqsr | INDEL | D6_15 | HG002complexvar | homalt | 99.4466 | 99.9145 | 98.9831 | 63.0094 | 1168 | 1 | 1168 | 12 | 11 | 91.6667 | |
ckim-vqsr | INDEL | D16_PLUS | HG002complexvar | * | 97.6423 | 97.5046 | 97.7805 | 66.9855 | 1602 | 41 | 1586 | 36 | 28 | 77.7778 | |
ckim-vqsr | INDEL | D16_PLUS | HG002complexvar | het | 98.3872 | 98.7353 | 98.0415 | 69.0000 | 1093 | 14 | 851 | 17 | 10 | 58.8235 | |
ckim-vqsr | INDEL | D16_PLUS | HG002complexvar | hetalt | 93.2896 | 89.8785 | 96.9697 | 47.4403 | 222 | 25 | 448 | 14 | 14 | 100.0000 | |
ckim-vqsr | INDEL | D16_PLUS | HG002complexvar | homalt | 98.7952 | 99.3080 | 98.2877 | 76.3371 | 287 | 2 | 287 | 5 | 4 | 80.0000 | |
bgallagher-sentieon | INDEL | I16_PLUS | HG002complexvar | * | 98.3871 | 97.8610 | 98.9189 | 67.3392 | 1281 | 28 | 1281 | 14 | 14 | 100.0000 | |
bgallagher-sentieon | INDEL | I16_PLUS | HG002complexvar | het | 99.3949 | 98.7970 | 100.0000 | 64.2575 | 657 | 8 | 633 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | HG002complexvar | hetalt | 96.7847 | 94.0299 | 99.7059 | 69.0909 | 315 | 20 | 339 | 1 | 1 | 100.0000 | |
bgallagher-sentieon | INDEL | I16_PLUS | HG002complexvar | homalt | 97.9398 | 100.0000 | 95.9627 | 70.5667 | 309 | 0 | 309 | 13 | 13 | 100.0000 | |
bgallagher-sentieon | INDEL | I1_5 | HG002complexvar | * | 99.6940 | 99.5564 | 99.8319 | 56.9171 | 33215 | 148 | 33263 | 56 | 45 | 80.3571 | |
bgallagher-sentieon | INDEL | I1_5 | HG002complexvar | het | 99.7743 | 99.6591 | 99.8897 | 57.8575 | 18127 | 62 | 18108 | 20 | 10 | 50.0000 | |
bgallagher-sentieon | INDEL | I1_5 | HG002complexvar | hetalt | 97.6373 | 95.5968 | 99.7669 | 69.6337 | 1650 | 76 | 1712 | 4 | 4 | 100.0000 | |
bgallagher-sentieon | INDEL | I1_5 | HG002complexvar | homalt | 99.8440 | 99.9256 | 99.7625 | 52.9997 | 13438 | 10 | 13443 | 32 | 31 | 96.8750 | |
bgallagher-sentieon | INDEL | D6_15 | HG002complexvar | * | 98.0701 | 97.7744 | 98.3675 | 58.4379 | 5184 | 118 | 5182 | 86 | 79 | 91.8605 | |
bgallagher-sentieon | INDEL | D6_15 | HG002complexvar | het | 98.9817 | 98.8462 | 99.1176 | 59.3518 | 3084 | 36 | 3033 | 27 | 21 | 77.7778 | |
bgallagher-sentieon | INDEL | D6_15 | HG002complexvar | hetalt | 94.0808 | 91.9052 | 96.3618 | 47.7926 | 931 | 82 | 980 | 37 | 37 | 100.0000 | |
bgallagher-sentieon | INDEL | D6_15 | HG002complexvar | homalt | 99.0678 | 100.0000 | 98.1528 | 62.7696 | 1169 | 0 | 1169 | 22 | 21 | 95.4545 | |
bgallagher-sentieon | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
bgallagher-sentieon | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
bgallagher-sentieon | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
bgallagher-sentieon | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
bgallagher-sentieon | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
bgallagher-sentieon | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
bgallagher-sentieon | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
bgallagher-sentieon | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
bgallagher-sentieon | INDEL | D16_PLUS | HG002complexvar | * | 97.3999 | 97.3828 | 97.4170 | 66.7553 | 1600 | 43 | 1584 | 42 | 31 | 73.8095 | |
bgallagher-sentieon | INDEL | D16_PLUS | HG002complexvar | het | 98.0634 | 98.6450 | 97.4886 | 68.5684 | 1092 | 15 | 854 | 22 | 12 | 54.5455 | |
bgallagher-sentieon | INDEL | D16_PLUS | HG002complexvar | hetalt | 93.0557 | 89.4737 | 96.9365 | 48.0682 | 221 | 26 | 443 | 14 | 14 | 100.0000 | |
bgallagher-sentieon | INDEL | D16_PLUS | HG002complexvar | homalt | 98.6254 | 99.3080 | 97.9522 | 76.0621 | 287 | 2 | 287 | 6 | 5 | 83.3333 | |
bgallagher-sentieon | INDEL | D1_5 | HG002complexvar | * | 99.6177 | 99.4956 | 99.7400 | 58.4446 | 32550 | 165 | 32605 | 85 | 76 | 89.4118 | |
bgallagher-sentieon | INDEL | D1_5 | HG002complexvar | het | 99.8096 | 99.7111 | 99.9084 | 56.0707 | 20705 | 60 | 20713 | 19 | 12 | 63.1579 | |
bgallagher-sentieon | INDEL | D1_5 | HG002complexvar | hetalt | 94.8411 | 92.8994 | 96.8657 | 72.1182 | 1256 | 96 | 1298 | 42 | 42 | 100.0000 | |
bgallagher-sentieon | INDEL | D1_5 | HG002complexvar | homalt | 99.8445 | 99.9151 | 99.7740 | 60.1815 | 10589 | 9 | 10594 | 24 | 22 | 91.6667 |