PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7951-8000 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | * | map_l250_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.7778 | 5 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m2_e1 | homalt | 73.4760 | 59.4828 | 96.0784 | 96.3480 | 69 | 47 | 98 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | C6_15 | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | * | 97.9485 | 96.6049 | 99.3300 | 87.0027 | 2817 | 99 | 2817 | 19 | 10 | 52.6316 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | het | 97.3057 | 95.5725 | 99.1029 | 86.9625 | 1878 | 87 | 1878 | 17 | 8 | 47.0588 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | homalt | 99.3631 | 98.9429 | 99.7868 | 87.0245 | 936 | 10 | 936 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 99.6894 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 99.6564 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | * | 98.3031 | 97.0055 | 99.6358 | 87.9552 | 4924 | 152 | 4924 | 18 | 9 | 50.0000 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | het | 97.7791 | 96.0897 | 99.5290 | 88.4572 | 3170 | 129 | 3170 | 15 | 6 | 40.0000 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.4286 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | homalt | 99.3193 | 98.8149 | 99.8290 | 86.9124 | 1751 | 21 | 1751 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e1 | * | 62.5000 | 100.0000 | 45.4545 | 99.0152 | 5 | 0 | 5 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.7461 | 3 | 0 | 4 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 50.0000 | 100.0000 | 33.3333 | 99.3737 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 89.4737 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 86.6667 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | * | map_l250_m2_e1 | * | 98.1843 | 98.1720 | 98.1966 | 88.3789 | 7841 | 146 | 7841 | 144 | 6 | 4.1667 | |
| raldana-dualsentieon | SNP | * | map_l250_m2_e1 | het | 97.5147 | 97.6444 | 97.3854 | 89.4825 | 5140 | 124 | 5140 | 138 | 3 | 2.1739 | |
| raldana-dualsentieon | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.0952 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l250_m2_e1 | homalt | 99.4834 | 99.1906 | 99.7779 | 85.3835 | 2696 | 22 | 2696 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | C16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m2_e1 | * | 76.9231 | 62.5000 | 100.0000 | 97.3684 | 5 | 3 | 5 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 97.3451 | 3 | 2 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 96.9231 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | map_l250_m2_e1 | * | 96.3746 | 95.7958 | 96.9605 | 99.6645 | 319 | 14 | 319 | 10 | 5 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e1 | het | 95.9233 | 94.7867 | 97.0874 | 95.8874 | 200 | 11 | 200 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e1 | hetalt | 92.3077 | 100.0000 | 85.7143 | 98.1771 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e1 | homalt | 97.4138 | 97.4138 | 97.4138 | 95.3036 | 113 | 3 | 113 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | * | 93.4498 | 93.8596 | 93.0435 | 95.5461 | 107 | 7 | 107 | 8 | 1 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | het | 91.0448 | 92.4242 | 89.7059 | 95.8838 | 61 | 5 | 61 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0198 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7033 | 95.6522 | 97.7778 | 94.5718 | 44 | 2 | 44 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||