PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7901-7950 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | tv | map_l250_m2_e1 | * | 69.6890 | 54.5610 | 96.4242 | 96.4387 | 1591 | 1325 | 1591 | 59 | 1 | 1.6949 | |
| ckim-gatk | SNP | tv | map_l250_m2_e1 | het | 72.9840 | 59.1858 | 95.1718 | 96.8842 | 1163 | 802 | 1163 | 59 | 1 | 1.6949 | |
| ckim-gatk | SNP | tv | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.2366 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l250_m2_e1 | homalt | 62.1996 | 45.1374 | 100.0000 | 93.8825 | 427 | 519 | 427 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e1 | * | 64.9819 | 48.6486 | 97.8261 | 97.0101 | 90 | 95 | 90 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e1 | het | 69.4952 | 54.0984 | 97.1429 | 97.2741 | 66 | 56 | 68 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e1 | homalt | 53.6585 | 36.6667 | 100.0000 | 94.4584 | 22 | 38 | 22 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e1 | * | 41.3793 | 27.2727 | 85.7143 | 97.7848 | 6 | 16 | 6 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e1 | het | 33.3333 | 21.4286 | 75.0000 | 98.3806 | 3 | 11 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 97.5000 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 93.1034 | 2 | 4 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e1 | * | 93.0233 | 90.9091 | 95.2381 | 97.0213 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e1 | het | 96.5517 | 100.0000 | 93.3333 | 96.7742 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 97.8261 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 97.4227 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-dragen | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | * | 95.4509 | 96.7568 | 94.1799 | 95.8498 | 179 | 6 | 178 | 11 | 2 | 18.1818 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | het | 94.7887 | 97.5410 | 92.1875 | 96.1481 | 119 | 3 | 118 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4962 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4790 | 96.6667 | 98.3051 | 94.6266 | 58 | 2 | 58 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 98.5915 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.1982 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e1 | * | 92.9825 | 92.9825 | 92.9825 | 96.4607 | 106 | 8 | 106 | 8 | 3 | 37.5000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e1 | het | 91.6031 | 90.9091 | 92.3077 | 97.1302 | 60 | 6 | 60 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0566 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e1 | homalt | 95.7447 | 97.8261 | 93.7500 | 94.3529 | 45 | 1 | 45 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e1 | * | 54.5455 | 60.0000 | 50.0000 | 98.5294 | 3 | 2 | 3 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e1 | het | 50.0000 | 66.6667 | 40.0000 | 98.3819 | 2 | 1 | 2 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.8095 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m2_e1 | * | 75.9087 | 66.0661 | 89.1975 | 97.9280 | 220 | 113 | 289 | 35 | 17 | 48.5714 | |
| qzeng-custom | INDEL | * | map_l250_m2_e1 | het | 76.6254 | 69.1943 | 85.8447 | 98.2768 | 146 | 65 | 188 | 31 | 16 | 51.6129 | |