PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1582 1583 1584 1585 1586 1587 1588 1589 1590 ... 1720 1721 » 79251-79300 / 86044 show all
ckim-isaac	INDEL	C1_5	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C1_5	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C6_15	HG002complexvar	*	0.0000	50.0000	0.0000	0.0000	2	2	0	0	0
ckim-isaac	INDEL	C6_15	HG002complexvar	het	0.0000	50.0000	0.0000	0.0000	2	2	0	0	0
ckim-isaac	INDEL	C6_15	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C6_15	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C16_PLUS	HG002complexvar	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C16_PLUS	HG002complexvar	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C16_PLUS	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C16_PLUS	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ciseli-custom	INDEL	D16_PLUS	HG002complexvar	*	48.6337	42.4224	56.9758	58.5526	697	946	682	515	432	83.8835
ciseli-custom	INDEL	D16_PLUS	HG002complexvar	het	53.6535	38.4824	88.5714	55.2511	426	681	434	56	34	60.7143
ciseli-custom	INDEL	D16_PLUS	HG002complexvar	hetalt	0.0000	6.0729	0.0000	0.0000	15	232	0	0	0
ciseli-custom	INDEL	D16_PLUS	HG002complexvar	homalt	50.2549	88.5813	35.0778	60.5689	256	33	248	459	398	86.7102
ciseli-custom	INDEL	D1_5	HG002complexvar	*	84.6887	87.0694	82.4348	57.7103	28483	4230	28182	6005	2638	43.9301
ciseli-custom	INDEL	D1_5	HG002complexvar	het	87.0231	88.2917	85.7906	58.0288	18332	2431	18318	3034	650	21.4239
ciseli-custom	INDEL	D1_5	HG002complexvar	hetalt	0.0000	7.7663	0.0000	0.0000	105	1247	0	0	0
ciseli-custom	INDEL	D1_5	HG002complexvar	homalt	84.8845	94.7915	76.8524	57.1696	10046	552	9864	2971	1988	66.9135
ciseli-custom	INDEL	D6_15	HG002complexvar	*	60.6154	60.3471	60.8861	55.7398	3199	2102	3202	2057	1257	61.1084
ciseli-custom	INDEL	D6_15	HG002complexvar	het	69.9812	65.9506	74.5366	56.4774	2057	1062	2131	728	196	26.9231
ciseli-custom	INDEL	D6_15	HG002complexvar	hetalt	0.0000	6.5153	0.0000	0.0000	66	947	0	0	0
ciseli-custom	INDEL	D6_15	HG002complexvar	homalt	60.1083	92.0445	44.6250	54.8278	1076	93	1071	1329	1061	79.8345
ciseli-custom	INDEL	C6_15	HG002complexvar	*	35.4067	50.0000	27.4074	91.9258	2	2	37	98	37	37.7551
ciseli-custom	INDEL	C6_15	HG002complexvar	het	56.6038	50.0000	65.2174	92.6045	2	2	15	8	0	0.0000
ciseli-custom	INDEL	C6_15	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ciseli-custom	INDEL	C6_15	HG002complexvar	homalt	0.0000	0.0000	19.6429	91.7708	0	0	22	90	37	41.1111
ciseli-custom	INDEL	*	HG002complexvar	*	81.0665	80.3871	81.7575	57.5412	61845	15089	61574	13739	8055	58.6287
ciseli-custom	INDEL	*	HG002complexvar	het	83.6520	81.8863	85.4955	58.3237	37838	8370	38019	6450	2732	42.3566
ciseli-custom	INDEL	*	HG002complexvar	hetalt	0.0000	5.8394	0.0000	0.0000	216	3483	0	0	0
ciseli-custom	INDEL	*	HG002complexvar	homalt	81.7869	88.0268	76.3731	56.3608	23791	3236	23555	7287	5323	73.0479
cchapple-custom	SNP	tv	HG002complexvar	*	99.7805	99.6506	99.9108	21.2813	245292	860	244113	218	153	70.1835
cchapple-custom	SNP	tv	HG002complexvar	het	99.7615	99.6630	99.8602	21.5432	150223	508	149954	210	146	69.5238
cchapple-custom	SNP	tv	HG002complexvar	hetalt	0.0000	99.0323	0.0000	0.0000	307	3	0	0	0
cchapple-custom	SNP	tv	HG002complexvar	homalt	99.8120	99.6331	99.9915	20.8601	94762	349	94159	8	7	87.5000
ciseli-custom	INDEL	C1_5	HG002complexvar	*	31.3007	28.5714	34.6065	88.1221	2	5	299	565	143	25.3097
ciseli-custom	INDEL	C1_5	HG002complexvar	het	38.3292	28.5714	58.2090	91.1900	2	5	78	56	4	7.1429
ciseli-custom	INDEL	C1_5	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ciseli-custom	INDEL	C1_5	HG002complexvar	homalt	0.0000	0.0000	30.2740	87.3110	0	0	221	509	139	27.3084
ciseli-custom	INDEL	C16_PLUS	HG002complexvar	*	0.0000	0.0000	23.8095	92.5926	0	0	10	32	15	46.8750
ciseli-custom	INDEL	C16_PLUS	HG002complexvar	het	0.0000	0.0000	28.5714	91.1392	0	0	2	5	0	0.0000
ciseli-custom	INDEL	C16_PLUS	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ciseli-custom	INDEL	C16_PLUS	HG002complexvar	homalt	0.0000	0.0000	22.8571	92.8279	0	0	8	27	15	55.5556
ckim-gatk	INDEL	C1_5	HG002complexvar	*	0.0000	85.7143	0.0000	0.0000	6	1	0	0	0
ckim-gatk	INDEL	C1_5	HG002complexvar	het	0.0000	85.7143	0.0000	0.0000	6	1	0	0	0
ckim-gatk	INDEL	C1_5	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C1_5	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	HG002complexvar	*	0.0000	100.0000	0.0000	0.0000	4	0	0	0	0
ckim-gatk	INDEL	C6_15	HG002complexvar	het	0.0000	100.0000	0.0000	0.0000	4	0	0	0	0
ckim-gatk	INDEL	C6_15	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge