PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
79201-79250 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | ti | HG002complexvar | * | 99.5943 | 99.2243 | 99.9671 | 17.9110 | 504492 | 3944 | 504432 | 166 | 74 | 44.5783 | |
| ckim-gatk | SNP | ti | HG002complexvar | het | 99.7549 | 99.5549 | 99.9557 | 17.5388 | 313365 | 1401 | 313315 | 139 | 50 | 35.9712 | |
| ckim-gatk | SNP | ti | HG002complexvar | hetalt | 97.5369 | 95.6522 | 99.4975 | 39.5137 | 198 | 9 | 198 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | ti | HG002complexvar | homalt | 99.3341 | 98.6902 | 99.9864 | 18.4846 | 190929 | 2534 | 190919 | 26 | 23 | 88.4615 | |
| ckim-gatk | INDEL | I6_15 | HG002complexvar | * | 98.1470 | 97.2454 | 99.0654 | 57.0085 | 4660 | 132 | 4664 | 44 | 43 | 97.7273 | |
| ckim-gatk | INDEL | I6_15 | HG002complexvar | het | 99.3586 | 98.9384 | 99.7824 | 59.6346 | 2330 | 25 | 2293 | 5 | 4 | 80.0000 | |
| ckim-gatk | INDEL | I6_15 | HG002complexvar | hetalt | 95.4701 | 91.3328 | 100.0000 | 52.5604 | 1117 | 106 | 1158 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | HG002complexvar | homalt | 98.3779 | 99.9176 | 96.8850 | 55.5556 | 1213 | 1 | 1213 | 39 | 39 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | HG002complexvar | * | 97.6146 | 97.6263 | 97.6030 | 66.9174 | 1604 | 39 | 1588 | 39 | 28 | 71.7949 | |
| ckim-gatk | INDEL | D16_PLUS | HG002complexvar | het | 98.3088 | 98.9160 | 97.7090 | 68.8770 | 1095 | 12 | 853 | 20 | 10 | 50.0000 | |
| ckim-gatk | INDEL | D16_PLUS | HG002complexvar | hetalt | 93.2896 | 89.8785 | 96.9697 | 47.4403 | 222 | 25 | 448 | 14 | 14 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | HG002complexvar | homalt | 98.7952 | 99.3080 | 98.2877 | 76.3371 | 287 | 2 | 287 | 5 | 4 | 80.0000 | |
| ckim-gatk | INDEL | D1_5 | HG002complexvar | * | 99.5163 | 99.3153 | 99.7181 | 58.5688 | 32491 | 224 | 32545 | 92 | 72 | 78.2609 | |
| ckim-gatk | INDEL | D1_5 | HG002complexvar | het | 99.7759 | 99.7111 | 99.8409 | 56.3066 | 20705 | 60 | 20710 | 33 | 15 | 45.4545 | |
| ckim-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 92.5788 | 88.8314 | 96.6563 | 72.4212 | 1201 | 151 | 1243 | 43 | 43 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | HG002complexvar | homalt | 99.8633 | 99.8773 | 99.8492 | 60.1757 | 10585 | 13 | 10592 | 16 | 14 | 87.5000 | |
| ckim-gatk | INDEL | I16_PLUS | HG002complexvar | * | 98.6154 | 97.9374 | 99.3029 | 66.7953 | 1282 | 27 | 1282 | 9 | 9 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | HG002complexvar | het | 99.4709 | 98.9474 | 100.0000 | 64.5414 | 658 | 7 | 634 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | HG002complexvar | hetalt | 96.6468 | 94.0299 | 99.4135 | 66.8932 | 315 | 20 | 339 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | HG002complexvar | homalt | 98.8800 | 100.0000 | 97.7848 | 70.4673 | 309 | 0 | 309 | 7 | 7 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | HG002complexvar | * | 99.4404 | 99.0498 | 99.8341 | 56.8511 | 33046 | 317 | 33092 | 55 | 41 | 74.5455 | |
| ckim-gatk | INDEL | I1_5 | HG002complexvar | het | 99.7716 | 99.6866 | 99.8566 | 58.0913 | 18132 | 57 | 18110 | 26 | 13 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | HG002complexvar | hetalt | 92.1829 | 85.6895 | 99.7411 | 68.7184 | 1479 | 247 | 1541 | 4 | 4 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | HG002complexvar | homalt | 99.8588 | 99.9033 | 99.8143 | 52.9260 | 13435 | 13 | 13441 | 25 | 24 | 96.0000 | |
| ckim-gatk | INDEL | D6_15 | HG002complexvar | * | 98.1151 | 97.6990 | 98.5347 | 58.5306 | 5180 | 122 | 5178 | 77 | 70 | 90.9091 | |
| ckim-gatk | INDEL | D6_15 | HG002complexvar | het | 99.0142 | 98.9423 | 99.0862 | 59.4709 | 3087 | 33 | 3036 | 28 | 22 | 78.5714 | |
| ckim-gatk | INDEL | D6_15 | HG002complexvar | hetalt | 93.7593 | 91.3129 | 96.3403 | 47.3985 | 925 | 88 | 974 | 37 | 37 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | HG002complexvar | homalt | 99.4466 | 99.9145 | 98.9831 | 63.0094 | 1168 | 1 | 1168 | 12 | 11 | 91.6667 | |
| ckim-isaac | INDEL | D1_5 | HG002complexvar | * | 94.1980 | 91.4993 | 97.0606 | 47.3235 | 29934 | 2781 | 29752 | 901 | 456 | 50.6104 | |
| ckim-isaac | INDEL | D1_5 | HG002complexvar | het | 94.5641 | 92.7330 | 96.4689 | 45.1790 | 19256 | 1509 | 18687 | 684 | 323 | 47.2222 | |
| ckim-isaac | INDEL | D1_5 | HG002complexvar | hetalt | 83.2980 | 76.1834 | 91.8782 | 58.9369 | 1030 | 322 | 1448 | 128 | 116 | 90.6250 | |
| ckim-isaac | INDEL | D1_5 | HG002complexvar | homalt | 94.8892 | 91.0360 | 99.0830 | 48.9641 | 9648 | 950 | 9617 | 89 | 17 | 19.1011 | |
| ckim-isaac | INDEL | D6_15 | HG002complexvar | * | 83.7635 | 78.4798 | 89.8099 | 48.6609 | 4161 | 1141 | 4063 | 461 | 184 | 39.9132 | |
| ckim-isaac | INDEL | D6_15 | HG002complexvar | het | 83.3579 | 80.6410 | 86.2642 | 49.0301 | 2516 | 604 | 1972 | 314 | 100 | 31.8471 | |
| ckim-isaac | INDEL | D6_15 | HG002complexvar | hetalt | 82.1814 | 73.2478 | 93.5968 | 47.9210 | 742 | 271 | 1184 | 81 | 69 | 85.1852 | |
| ckim-isaac | INDEL | D6_15 | HG002complexvar | homalt | 84.4830 | 77.2455 | 93.2169 | 48.7355 | 903 | 266 | 907 | 66 | 15 | 22.7273 | |
| ckim-isaac | INDEL | D16_PLUS | HG002complexvar | * | 76.1289 | 68.2288 | 86.0979 | 58.5597 | 1121 | 522 | 1090 | 176 | 59 | 33.5227 | |
| ckim-isaac | INDEL | D16_PLUS | HG002complexvar | het | 76.6298 | 73.5321 | 80.0000 | 57.0120 | 814 | 293 | 488 | 122 | 28 | 22.9508 | |
| ckim-isaac | INDEL | D16_PLUS | HG002complexvar | hetalt | 71.9738 | 58.7045 | 92.9936 | 55.5660 | 145 | 102 | 438 | 33 | 26 | 78.7879 | |
| ckim-isaac | INDEL | D16_PLUS | HG002complexvar | homalt | 68.6813 | 56.0554 | 88.6486 | 67.8819 | 162 | 127 | 164 | 21 | 5 | 23.8095 | |
| ckim-gatk | SNP | tv | HG002complexvar | * | 99.5164 | 99.0689 | 99.9680 | 22.5419 | 243860 | 2292 | 243768 | 78 | 28 | 35.8974 | |
| ckim-gatk | SNP | tv | HG002complexvar | het | 99.7094 | 99.4639 | 99.9560 | 22.1876 | 149923 | 808 | 149845 | 66 | 19 | 28.7879 | |
| ckim-gatk | SNP | tv | HG002complexvar | hetalt | 98.0328 | 96.4516 | 99.6667 | 39.8798 | 299 | 11 | 299 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | tv | HG002complexvar | homalt | 99.2138 | 98.4513 | 99.9883 | 23.0317 | 93638 | 1473 | 93624 | 11 | 8 | 72.7273 | |
| ckim-isaac | INDEL | * | HG002complexvar | * | 91.9300 | 88.4153 | 95.7357 | 48.5598 | 68025 | 8913 | 67037 | 2986 | 1352 | 45.2780 | |
| ckim-isaac | INDEL | * | HG002complexvar | het | 92.2376 | 90.0654 | 94.5171 | 48.6355 | 41621 | 4591 | 40028 | 2322 | 1017 | 43.7984 | |
| ckim-isaac | INDEL | * | HG002complexvar | hetalt | 77.5562 | 66.5856 | 92.8550 | 56.3369 | 2463 | 1236 | 3119 | 240 | 203 | 84.5833 | |
| ckim-isaac | INDEL | * | HG002complexvar | homalt | 93.1685 | 88.5818 | 98.2561 | 47.1228 | 23941 | 3086 | 23890 | 424 | 132 | 31.1321 | |
| ckim-isaac | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||