PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
79051-79100 / 86044 show all | |||||||||||||||
raldana-dualsentieon | INDEL | D1_5 | HG002complexvar | hetalt | 97.5400 | 95.2663 | 99.9249 | 72.3364 | 1288 | 64 | 1331 | 1 | 1 | 100.0000 | |
raldana-dualsentieon | INDEL | D1_5 | HG002complexvar | homalt | 99.8492 | 99.9151 | 99.7834 | 59.8813 | 10589 | 9 | 10594 | 23 | 21 | 91.3043 | |
raldana-dualsentieon | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
raldana-dualsentieon | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
raldana-dualsentieon | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | * | 96.5485 | 94.7048 | 98.4655 | 65.1748 | 1556 | 87 | 1540 | 24 | 18 | 75.0000 | |
raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | het | 95.8589 | 93.7669 | 98.0464 | 66.4344 | 1038 | 69 | 803 | 16 | 11 | 68.7500 | |
raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | hetalt | 96.3423 | 93.5223 | 99.3377 | 47.4478 | 231 | 16 | 450 | 3 | 3 | 100.0000 | |
raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | homalt | 98.7952 | 99.3080 | 98.2877 | 75.4415 | 287 | 2 | 287 | 5 | 4 | 80.0000 | |
ndellapenna-hhga | INDEL | D6_15 | HG002complexvar | * | 88.9462 | 85.9864 | 92.1169 | 57.7872 | 4559 | 743 | 4569 | 391 | 292 | 74.6803 | |
ndellapenna-hhga | INDEL | D6_15 | HG002complexvar | het | 92.6198 | 92.8205 | 92.4200 | 56.3998 | 2896 | 224 | 2975 | 244 | 197 | 80.7377 | |
ndellapenna-hhga | INDEL | D6_15 | HG002complexvar | hetalt | 66.5397 | 51.3327 | 94.5493 | 59.4388 | 520 | 493 | 451 | 26 | 23 | 88.4615 | |
ndellapenna-hhga | INDEL | D6_15 | HG002complexvar | homalt | 93.9581 | 97.7759 | 90.4272 | 60.3886 | 1143 | 26 | 1143 | 121 | 72 | 59.5041 | |
ndellapenna-hhga | INDEL | I6_15 | HG002complexvar | * | 96.1681 | 95.0125 | 97.3521 | 56.1640 | 4553 | 239 | 4559 | 124 | 74 | 59.6774 | |
ndellapenna-hhga | INDEL | I6_15 | HG002complexvar | het | 96.5036 | 95.1592 | 97.8864 | 58.1922 | 2241 | 114 | 2223 | 48 | 17 | 35.4167 | |
ndellapenna-hhga | INDEL | I6_15 | HG002complexvar | hetalt | 95.3564 | 92.8046 | 98.0525 | 53.9032 | 1135 | 88 | 1158 | 23 | 21 | 91.3043 | |
ndellapenna-hhga | INDEL | I6_15 | HG002complexvar | homalt | 96.3193 | 96.9522 | 95.6946 | 54.2209 | 1177 | 37 | 1178 | 53 | 36 | 67.9245 | |
ndellapenna-hhga | INDEL | D1_5 | HG002complexvar | * | 97.3122 | 96.7874 | 97.8426 | 54.8110 | 31664 | 1051 | 31656 | 698 | 573 | 82.0917 | |
ndellapenna-hhga | INDEL | D1_5 | HG002complexvar | het | 97.7232 | 97.5199 | 97.9274 | 51.5698 | 20250 | 515 | 20317 | 430 | 365 | 84.8837 | |
ndellapenna-hhga | INDEL | D1_5 | HG002complexvar | hetalt | 79.8795 | 68.7130 | 95.3795 | 77.9155 | 929 | 423 | 867 | 42 | 39 | 92.8571 | |
ndellapenna-hhga | INDEL | D1_5 | HG002complexvar | homalt | 98.4078 | 98.9338 | 97.8875 | 56.5863 | 10485 | 113 | 10472 | 226 | 169 | 74.7788 | |
ndellapenna-hhga | INDEL | I1_5 | HG002complexvar | * | 98.8448 | 98.3844 | 99.3095 | 53.7677 | 32824 | 539 | 32792 | 228 | 116 | 50.8772 | |
ndellapenna-hhga | INDEL | I1_5 | HG002complexvar | het | 98.8489 | 98.2847 | 99.4197 | 54.6026 | 17877 | 312 | 17818 | 104 | 33 | 31.7308 | |
ndellapenna-hhga | INDEL | I1_5 | HG002complexvar | hetalt | 96.3808 | 94.4380 | 98.4052 | 70.6127 | 1630 | 96 | 1666 | 27 | 26 | 96.2963 | |
ndellapenna-hhga | INDEL | I1_5 | HG002complexvar | homalt | 99.1510 | 99.0259 | 99.2764 | 48.8027 | 13317 | 131 | 13308 | 97 | 57 | 58.7629 | |
ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | * | 84.9902 | 80.5843 | 89.9058 | 63.0348 | 1324 | 319 | 1336 | 150 | 106 | 70.6667 | |
ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | het | 89.4513 | 85.6369 | 93.6214 | 62.1643 | 948 | 159 | 910 | 62 | 44 | 70.9677 | |
ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | hetalt | 58.9170 | 42.1053 | 98.0769 | 57.6087 | 104 | 143 | 153 | 3 | 2 | 66.6667 | |
ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | homalt | 84.2511 | 94.1176 | 76.2570 | 66.9437 | 272 | 17 | 273 | 85 | 60 | 70.5882 | |
ndellapenna-hhga | SNP | * | HG002complexvar | * | 99.7910 | 99.6474 | 99.9350 | 18.9550 | 751721 | 2660 | 751769 | 489 | 351 | 71.7791 | |
ndellapenna-hhga | SNP | * | HG002complexvar | het | 99.7473 | 99.5353 | 99.9601 | 18.3091 | 463334 | 2163 | 463353 | 185 | 79 | 42.7027 | |
ndellapenna-hhga | SNP | * | HG002complexvar | hetalt | 98.7097 | 98.7097 | 98.7097 | 40.9524 | 306 | 4 | 306 | 4 | 4 | 100.0000 | |
ndellapenna-hhga | SNP | * | HG002complexvar | homalt | 99.8626 | 99.8292 | 99.8960 | 19.9404 | 288081 | 493 | 288110 | 300 | 268 | 89.3333 | |
ndellapenna-hhga | SNP | ti | HG002complexvar | * | 99.8069 | 99.6755 | 99.9387 | 17.4775 | 506786 | 1650 | 506808 | 311 | 223 | 71.7042 | |
ndellapenna-hhga | SNP | ti | HG002complexvar | het | 99.7687 | 99.5752 | 99.9630 | 16.8677 | 313429 | 1337 | 313430 | 116 | 49 | 42.2414 | |
ndellapenna-hhga | SNP | ti | HG002complexvar | hetalt | 98.3051 | 98.0676 | 98.5437 | 41.1429 | 203 | 4 | 203 | 3 | 3 | 100.0000 | |
ndellapenna-hhga | SNP | ti | HG002complexvar | homalt | 99.8705 | 99.8403 | 99.9007 | 18.4130 | 193154 | 309 | 193175 | 192 | 171 | 89.0625 | |
ndellapenna-hhga | INDEL | I16_PLUS | HG002complexvar | * | 92.7599 | 90.0688 | 95.6169 | 66.4762 | 1179 | 130 | 1178 | 54 | 28 | 51.8519 | |
ndellapenna-hhga | INDEL | I16_PLUS | HG002complexvar | het | 92.9757 | 90.9774 | 95.0637 | 67.1720 | 605 | 60 | 597 | 31 | 15 | 48.3871 | |
ndellapenna-hhga | INDEL | I16_PLUS | HG002complexvar | hetalt | 90.3719 | 83.8806 | 97.9522 | 65.2019 | 281 | 54 | 287 | 6 | 3 | 50.0000 | |
ndellapenna-hhga | INDEL | I16_PLUS | HG002complexvar | homalt | 94.6777 | 94.8220 | 94.5338 | 66.1957 | 293 | 16 | 294 | 17 | 10 | 58.8235 | |
mlin-fermikit | INDEL | I6_15 | HG002complexvar | * | 88.7918 | 85.8097 | 91.9886 | 56.6838 | 4112 | 680 | 4191 | 365 | 361 | 98.9041 | |
mlin-fermikit | INDEL | I6_15 | HG002complexvar | het | 91.0577 | 91.3376 | 90.7795 | 57.5294 | 2151 | 204 | 2166 | 220 | 217 | 98.6364 | |
mlin-fermikit | INDEL | I6_15 | HG002complexvar | hetalt | 80.4538 | 68.1930 | 98.0899 | 54.1945 | 834 | 389 | 873 | 17 | 17 | 100.0000 | |
mlin-fermikit | INDEL | I6_15 | HG002complexvar | homalt | 91.3948 | 92.8336 | 90.0000 | 56.7129 | 1127 | 87 | 1152 | 128 | 127 | 99.2188 |