PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78951-79000 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D1_5 | HG002compoundhet | hetalt | 91.1048 | 83.6629 | 100.0000 | 61.9355 | 8547 | 1669 | 177 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | HG002compoundhet | homalt | 77.4248 | 96.9072 | 64.4647 | 67.2143 | 282 | 9 | 283 | 156 | 151 | 96.7949 | |
| qzeng-custom | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 41.1765 | 91.0526 | 0 | 0 | 7 | 10 | 1 | 10.0000 | |
| qzeng-custom | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 45.4545 | 92.3611 | 0 | 0 | 5 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 100.0000 | 90.4762 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 84.0000 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| ndellapenna-hhga | SNP | tv | HG002compoundhet | * | 98.0516 | 97.2879 | 98.8274 | 47.0684 | 8681 | 242 | 8681 | 103 | 93 | 90.2913 | |
| ndellapenna-hhga | SNP | tv | HG002compoundhet | het | 97.5455 | 95.6773 | 99.4882 | 51.9512 | 4471 | 202 | 4471 | 23 | 15 | 65.2174 | |
| ndellapenna-hhga | SNP | tv | HG002compoundhet | hetalt | 99.3579 | 98.7239 | 100.0000 | 23.5400 | 851 | 11 | 851 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | HG002compoundhet | homalt | 98.4034 | 99.1440 | 97.6737 | 43.8897 | 3359 | 29 | 3359 | 80 | 78 | 97.5000 | |
| qzeng-custom | INDEL | * | HG002compoundhet | * | 82.2978 | 79.3825 | 85.4354 | 55.6867 | 23783 | 6177 | 36410 | 6207 | 4106 | 66.1511 | |
| qzeng-custom | INDEL | * | HG002compoundhet | het | 90.0667 | 93.8691 | 86.5604 | 55.7571 | 3843 | 251 | 30091 | 4672 | 2782 | 59.5462 | |
| qzeng-custom | INDEL | * | HG002compoundhet | hetalt | 86.4434 | 76.5369 | 99.2955 | 48.8192 | 19272 | 5908 | 5638 | 40 | 29 | 72.5000 | |
| qzeng-custom | INDEL | * | HG002compoundhet | homalt | 47.3681 | 97.3761 | 31.2960 | 66.5488 | 668 | 18 | 681 | 1495 | 1295 | 86.6221 | |
| qzeng-custom | INDEL | C1_5 | HG002compoundhet | * | 89.2857 | 100.0000 | 80.6452 | 90.2054 | 1 | 0 | 50 | 12 | 2 | 16.6667 | |
| qzeng-custom | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 82.9787 | 90.9615 | 0 | 0 | 39 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | HG002compoundhet | hetalt | 77.7778 | 100.0000 | 63.6364 | 86.7470 | 1 | 0 | 7 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 100.0000 | 86.6667 | 0 | 0 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 3.0769 | 55.1724 | 0 | 0 | 2 | 63 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 4.7619 | 50.0000 | 0 | 0 | 2 | 40 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 57.4074 | 0 | 0 | 0 | 23 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 13.5135 | 79.8913 | 0 | 0 | 10 | 64 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 9.7561 | 77.0950 | 0 | 0 | 4 | 37 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 18.1818 | 81.8681 | 0 | 0 | 6 | 27 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | HG002complexvar | * | 94.6429 | 100.0000 | 89.8305 | 90.1503 | 4 | 0 | 53 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | C6_15 | HG002complexvar | het | 97.2222 | 100.0000 | 94.5946 | 90.1070 | 4 | 0 | 35 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 80.0000 | 90.0498 | 0 | 0 | 16 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | D16_PLUS | HG002complexvar | * | 86.2026 | 93.2441 | 80.1500 | 61.6049 | 1532 | 111 | 1603 | 397 | 75 | 18.8917 | |
| qzeng-custom | INDEL | D16_PLUS | HG002complexvar | het | 88.4674 | 95.9350 | 82.0784 | 59.1925 | 1062 | 45 | 1319 | 288 | 45 | 15.6250 | |
| qzeng-custom | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 76.9231 | 0.0000 | 0.0000 | 190 | 57 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | HG002complexvar | homalt | 82.7833 | 96.8858 | 72.2646 | 69.0795 | 280 | 9 | 284 | 109 | 30 | 27.5229 | |
| qzeng-custom | INDEL | D1_5 | HG002complexvar | * | 98.5796 | 98.0926 | 99.0713 | 54.7462 | 32091 | 624 | 32325 | 303 | 168 | 55.4455 | |
| qzeng-custom | INDEL | D1_5 | HG002complexvar | het | 98.6823 | 98.3530 | 99.0138 | 55.4973 | 20423 | 342 | 21686 | 216 | 103 | 47.6852 | |
| qzeng-custom | INDEL | D1_5 | HG002complexvar | hetalt | 93.1197 | 88.3876 | 98.3871 | 70.2875 | 1195 | 157 | 183 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | HG002complexvar | homalt | 99.0114 | 98.8205 | 99.2030 | 52.6484 | 10473 | 125 | 10456 | 84 | 62 | 73.8095 | |
| qzeng-custom | INDEL | C1_5 | HG002complexvar | * | 80.7714 | 71.4286 | 92.9260 | 89.3893 | 5 | 2 | 289 | 22 | 4 | 18.1818 | |
| qzeng-custom | INDEL | C1_5 | HG002complexvar | het | 80.8034 | 71.4286 | 93.0108 | 89.6031 | 5 | 2 | 173 | 13 | 1 | 7.6923 | |
| qzeng-custom | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 58.3333 | 88.4615 | 0 | 0 | 7 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 96.4602 | 89.1137 | 0 | 0 | 109 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | HG002complexvar | * | 99.7569 | 99.5881 | 99.9262 | 21.8704 | 245138 | 1014 | 245164 | 181 | 131 | 72.3757 | |
| ndellapenna-hhga | SNP | tv | HG002complexvar | het | 99.7024 | 99.4520 | 99.9540 | 21.1664 | 149905 | 826 | 149923 | 69 | 30 | 43.4783 | |
| ndellapenna-hhga | SNP | tv | HG002complexvar | hetalt | 98.7097 | 98.7097 | 98.7097 | 40.9524 | 306 | 4 | 306 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | HG002complexvar | homalt | 99.8464 | 99.8065 | 99.8864 | 22.8760 | 94927 | 184 | 94935 | 108 | 97 | 89.8148 | |
| qzeng-custom | INDEL | * | HG002complexvar | * | 97.6731 | 97.4200 | 97.9274 | 54.9567 | 74953 | 1985 | 77253 | 1635 | 731 | 44.7095 | |
| qzeng-custom | INDEL | * | HG002complexvar | het | 97.8163 | 97.7928 | 97.8398 | 56.2530 | 45192 | 1020 | 49233 | 1087 | 393 | 36.1546 | |
| qzeng-custom | INDEL | * | HG002complexvar | hetalt | 90.0705 | 82.9143 | 98.5786 | 66.1860 | 3067 | 632 | 1179 | 17 | 13 | 76.4706 | |
| qzeng-custom | INDEL | * | HG002complexvar | homalt | 98.4127 | 98.7679 | 98.0601 | 51.6191 | 26694 | 333 | 26841 | 531 | 325 | 61.2053 | |