PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78901-78950 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I6_15 | HG002compoundhet | * | 75.9258 | 69.2571 | 84.0157 | 36.6439 | 6078 | 2698 | 5992 | 1140 | 884 | 77.5439 | |
| qzeng-custom | INDEL | I6_15 | HG002compoundhet | het | 84.7648 | 91.3462 | 79.0682 | 44.3175 | 190 | 18 | 2274 | 602 | 437 | 72.5914 | |
| qzeng-custom | INDEL | I6_15 | HG002compoundhet | hetalt | 81.2263 | 68.6424 | 99.4598 | 26.8379 | 5860 | 2677 | 3682 | 20 | 14 | 70.0000 | |
| qzeng-custom | INDEL | I6_15 | HG002compoundhet | homalt | 12.1241 | 90.3226 | 6.4982 | 46.3178 | 28 | 3 | 36 | 518 | 433 | 83.5907 | |
| qzeng-custom | SNP | * | HG002compoundhet | * | 98.2824 | 98.1489 | 98.4164 | 46.9711 | 25344 | 478 | 25604 | 412 | 148 | 35.9223 | |
| qzeng-custom | SNP | * | HG002compoundhet | het | 97.8777 | 97.6372 | 98.1193 | 49.7459 | 13843 | 335 | 16591 | 318 | 73 | 22.9560 | |
| qzeng-custom | SNP | * | HG002compoundhet | hetalt | 98.5292 | 97.2158 | 99.8786 | 21.9697 | 838 | 24 | 823 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | HG002compoundhet | homalt | 98.8868 | 98.8963 | 98.8772 | 42.3069 | 10663 | 119 | 8190 | 93 | 74 | 79.5699 | |
| qzeng-custom | SNP | tv | HG002compoundhet | * | 98.0856 | 98.0500 | 98.1212 | 53.9878 | 8749 | 174 | 9244 | 177 | 64 | 36.1582 | |
| qzeng-custom | SNP | tv | HG002compoundhet | het | 97.5388 | 97.4321 | 97.6458 | 58.3399 | 4553 | 120 | 5641 | 136 | 28 | 20.5882 | |
| qzeng-custom | SNP | tv | HG002compoundhet | hetalt | 98.5292 | 97.2158 | 99.8786 | 21.9697 | 838 | 24 | 823 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | HG002compoundhet | homalt | 98.8473 | 99.1145 | 98.5816 | 49.2075 | 3358 | 30 | 2780 | 40 | 35 | 87.5000 | |
| ndellapenna-hhga | INDEL | C1_5 | HG002compoundhet | * | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | HG002compoundhet | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 94.2857 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | tv | HG002compoundhet | * | 91.2208 | 90.4965 | 91.9568 | 50.8884 | 8075 | 848 | 8083 | 707 | 593 | 83.8755 | |
| mlin-fermikit | SNP | tv | HG002compoundhet | het | 90.8488 | 84.0146 | 98.8934 | 54.3251 | 3926 | 747 | 3932 | 44 | 8 | 18.1818 | |
| mlin-fermikit | SNP | tv | HG002compoundhet | hetalt | 97.1360 | 94.4316 | 100.0000 | 20.8171 | 814 | 48 | 814 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | HG002compoundhet | homalt | 90.3108 | 98.4357 | 83.4250 | 51.0104 | 3335 | 53 | 3337 | 663 | 585 | 88.2353 | |
| ndellapenna-hhga | INDEL | * | HG002compoundhet | * | 77.5493 | 76.6121 | 78.5097 | 71.2626 | 22953 | 7007 | 23717 | 6492 | 6061 | 93.3611 | |
| ndellapenna-hhga | INDEL | * | HG002compoundhet | het | 62.3220 | 85.8085 | 48.9296 | 57.3342 | 3513 | 581 | 5051 | 5272 | 5065 | 96.0736 | |
| ndellapenna-hhga | INDEL | * | HG002compoundhet | hetalt | 85.1313 | 74.5631 | 99.1899 | 56.3007 | 18775 | 6405 | 18000 | 147 | 122 | 82.9932 | |
| ndellapenna-hhga | INDEL | * | HG002compoundhet | homalt | 54.9045 | 96.9388 | 38.2979 | 70.2430 | 665 | 21 | 666 | 1073 | 874 | 81.4539 | |
| mlin-fermikit | SNP | * | HG002compoundhet | * | 92.7673 | 91.9758 | 93.5725 | 42.5829 | 23750 | 2072 | 23759 | 1632 | 1332 | 81.6176 | |
| mlin-fermikit | SNP | * | HG002compoundhet | het | 92.5921 | 86.9234 | 99.0518 | 44.4618 | 12324 | 1854 | 12327 | 118 | 22 | 18.6441 | |
| mlin-fermikit | SNP | * | HG002compoundhet | hetalt | 97.1360 | 94.4316 | 100.0000 | 20.8171 | 814 | 48 | 814 | 0 | 0 | ||
| mlin-fermikit | SNP | * | HG002compoundhet | homalt | 92.6523 | 98.4233 | 87.5206 | 41.6338 | 10612 | 170 | 10618 | 1514 | 1310 | 86.5258 | |
| mlin-fermikit | SNP | ti | HG002compoundhet | * | 93.7043 | 92.8195 | 94.6061 | 36.5228 | 16223 | 1255 | 16224 | 925 | 739 | 79.8919 | |
| mlin-fermikit | SNP | ti | HG002compoundhet | het | 93.4304 | 88.3535 | 99.1262 | 38.1960 | 8398 | 1107 | 8395 | 74 | 14 | 18.9189 | |
| mlin-fermikit | SNP | ti | HG002compoundhet | hetalt | 97.2493 | 94.6459 | 100.0000 | 20.8092 | 548 | 31 | 548 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | HG002compoundhet | homalt | 93.7665 | 98.4176 | 89.5352 | 35.5677 | 7277 | 117 | 7281 | 851 | 725 | 85.1939 | |
| mlin-fermikit | INDEL | I6_15 | HG002compoundhet | * | 62.8773 | 55.7315 | 72.1249 | 36.3543 | 4891 | 3885 | 4898 | 1893 | 1888 | 99.7359 | |
| mlin-fermikit | INDEL | I6_15 | HG002compoundhet | het | 11.9006 | 62.5000 | 6.5764 | 49.1309 | 130 | 78 | 102 | 1449 | 1446 | 99.7930 | |
| mlin-fermikit | INDEL | I6_15 | HG002compoundhet | hetalt | 71.1432 | 55.4293 | 99.2920 | 28.6902 | 4732 | 3805 | 4768 | 34 | 34 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | HG002compoundhet | homalt | 11.9676 | 93.5484 | 6.3927 | 50.6201 | 29 | 2 | 28 | 410 | 408 | 99.5122 | |
| qzeng-custom | INDEL | D16_PLUS | HG002compoundhet | * | 75.9486 | 81.4609 | 71.1351 | 32.7367 | 1907 | 434 | 2112 | 857 | 326 | 38.0397 | |
| qzeng-custom | INDEL | D16_PLUS | HG002compoundhet | het | 84.4943 | 95.5556 | 75.7282 | 32.4836 | 387 | 18 | 2106 | 675 | 234 | 34.6667 | |
| qzeng-custom | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 78.4232 | 0.0000 | 0.0000 | 1512 | 416 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | HG002compoundhet | homalt | 6.1856 | 100.0000 | 3.1915 | 36.2712 | 8 | 0 | 6 | 182 | 92 | 50.5495 | |
| qzeng-custom | INDEL | D1_5 | HG002compoundhet | * | 88.1713 | 85.4271 | 91.0977 | 64.3947 | 10452 | 1783 | 11502 | 1124 | 856 | 76.1566 | |
| qzeng-custom | INDEL | D1_5 | HG002compoundhet | het | 92.9212 | 93.9236 | 91.9400 | 64.3165 | 1623 | 105 | 11042 | 968 | 705 | 72.8306 | |