PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78801-78850 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I16_PLUS | HG002compoundhet | * | 86.2940 | 82.1745 | 90.8483 | 50.5089 | 1761 | 382 | 1767 | 178 | 133 | 74.7191 | |
| ndellapenna-hhga | INDEL | I16_PLUS | HG002compoundhet | het | 51.2283 | 72.3404 | 39.6552 | 84.3243 | 34 | 13 | 46 | 70 | 55 | 78.5714 | |
| ndellapenna-hhga | INDEL | I16_PLUS | HG002compoundhet | hetalt | 90.0250 | 82.3698 | 99.2490 | 40.2898 | 1724 | 369 | 1718 | 13 | 9 | 69.2308 | |
| ndellapenna-hhga | INDEL | I16_PLUS | HG002compoundhet | homalt | 5.9406 | 100.0000 | 3.0612 | 66.3230 | 3 | 0 | 3 | 95 | 69 | 72.6316 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | * | 63.8133 | 53.4814 | 79.0931 | 40.7537 | 1252 | 1089 | 1343 | 355 | 284 | 80.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | het | 77.8675 | 83.4568 | 72.9798 | 46.7026 | 338 | 67 | 578 | 214 | 199 | 92.9907 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | hetalt | 63.9739 | 47.1473 | 99.4764 | 32.8056 | 909 | 1019 | 760 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | homalt | 6.6667 | 62.5000 | 3.5211 | 41.5638 | 5 | 3 | 5 | 137 | 82 | 59.8540 | |
| ndellapenna-hhga | INDEL | D6_15 | HG002compoundhet | * | 61.2798 | 52.8513 | 72.9065 | 39.3574 | 4773 | 4258 | 4954 | 1841 | 1725 | 93.6991 | |
| ndellapenna-hhga | INDEL | D6_15 | HG002compoundhet | het | 61.6175 | 85.1636 | 48.2714 | 46.2388 | 729 | 127 | 1480 | 1586 | 1544 | 97.3518 | |
| ndellapenna-hhga | INDEL | D6_15 | HG002compoundhet | hetalt | 65.8129 | 49.3191 | 98.8822 | 29.8693 | 4020 | 4131 | 3450 | 39 | 30 | 76.9231 | |
| ndellapenna-hhga | INDEL | D6_15 | HG002compoundhet | homalt | 18.1818 | 100.0000 | 10.0000 | 54.4592 | 24 | 0 | 24 | 216 | 151 | 69.9074 | |
| rpoplin-dv42 | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | * | 92.3351 | 89.3573 | 95.5182 | 36.0215 | 7842 | 934 | 7843 | 368 | 366 | 99.4565 | |
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | het | 75.0365 | 79.3269 | 71.1864 | 85.5155 | 165 | 43 | 126 | 51 | 51 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | hetalt | 94.4942 | 89.5631 | 100.0000 | 28.5953 | 7646 | 891 | 7686 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | homalt | 16.3588 | 100.0000 | 8.9080 | 58.9623 | 31 | 0 | 31 | 317 | 315 | 99.3691 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | * | 93.3591 | 92.7336 | 93.9930 | 68.4001 | 27783 | 2177 | 27758 | 1774 | 1747 | 98.4780 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | het | 81.4607 | 94.3576 | 71.6654 | 76.0047 | 3863 | 231 | 3804 | 1504 | 1483 | 98.6037 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | hetalt | 95.8717 | 92.3153 | 99.7130 | 50.6553 | 23245 | 1935 | 23276 | 67 | 66 | 98.5075 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | homalt | 86.3667 | 98.3965 | 76.9580 | 80.9842 | 675 | 11 | 678 | 203 | 198 | 97.5369 | |
| rpoplin-dv42 | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | SNP | tv | HG002compoundhet | * | 96.9959 | 94.2620 | 99.8931 | 47.1699 | 8411 | 512 | 8410 | 9 | 5 | 55.5556 | |
| raldana-dualsentieon | SNP | tv | HG002compoundhet | het | 94.2957 | 89.3216 | 99.8564 | 53.2191 | 4174 | 499 | 4172 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | HG002compoundhet | hetalt | 99.7674 | 99.5360 | 100.0000 | 22.0708 | 858 | 4 | 858 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | HG002compoundhet | homalt | 99.8228 | 99.7344 | 99.9113 | 42.6999 | 3379 | 9 | 3380 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | SNP | * | HG002compoundhet | * | 97.7792 | 95.7401 | 99.9071 | 39.6169 | 24722 | 1100 | 24722 | 23 | 15 | 65.2174 | |
| raldana-dualsentieon | SNP | * | HG002compoundhet | het | 95.9874 | 92.3755 | 99.8932 | 43.8424 | 13097 | 1081 | 13096 | 14 | 7 | 50.0000 | |
| raldana-dualsentieon | SNP | * | HG002compoundhet | hetalt | 99.7674 | 99.5360 | 100.0000 | 22.0708 | 858 | 4 | 858 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | HG002compoundhet | homalt | 99.8887 | 99.8609 | 99.9165 | 34.8192 | 10767 | 15 | 10768 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | SNP | ti | HG002compoundhet | * | 98.2432 | 96.6243 | 99.9172 | 34.4311 | 16888 | 590 | 16889 | 14 | 10 | 71.4286 | |
| raldana-dualsentieon | SNP | ti | HG002compoundhet | het | 96.7997 | 93.8769 | 99.9104 | 38.0325 | 8923 | 582 | 8924 | 8 | 4 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | HG002compoundhet | hetalt | 99.8270 | 99.6546 | 100.0000 | 21.4966 | 577 | 2 | 577 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | HG002compoundhet | homalt | 99.9189 | 99.9189 | 99.9189 | 30.4421 | 7388 | 6 | 7388 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | C1_5 | HG002compoundhet | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C1_5 | HG002compoundhet | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | * | 93.3249 | 90.3259 | 96.5299 | 36.1005 | 7927 | 849 | 7928 | 285 | 281 | 98.5965 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | het | 54.9434 | 79.8077 | 41.8919 | 76.8894 | 166 | 42 | 155 | 215 | 211 | 98.1395 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | hetalt | 95.0099 | 90.5470 | 99.9355 | 28.7042 | 7730 | 807 | 7742 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | homalt | 48.8189 | 100.0000 | 32.2917 | 75.1295 | 31 | 0 | 31 | 65 | 65 | 100.0000 | |
| rpoplin-dv42 | SNP | * | HG002compoundhet | * | 99.6493 | 99.5895 | 99.7091 | 40.7188 | 25716 | 106 | 25707 | 75 | 61 | 81.3333 | |
| rpoplin-dv42 | SNP | * | HG002compoundhet | het | 99.5408 | 99.3864 | 99.6957 | 45.1283 | 14091 | 87 | 14087 | 43 | 32 | 74.4186 | |