PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78601-78650 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 88.1356 | 86.5143 | 0 | 0 | 104 | 14 | 5 | 35.7143 | |
| cchapple-custom | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 88.0342 | 86.0382 | 0 | 0 | 103 | 14 | 5 | 35.7143 | |
| cchapple-custom | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2973 | 0 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | HG002compoundhet | * | 99.7142 | 99.7422 | 99.6862 | 48.7920 | 8900 | 23 | 8895 | 28 | 11 | 39.2857 | |
| bgallagher-sentieon | SNP | tv | HG002compoundhet | het | 99.6043 | 99.6576 | 99.5511 | 55.0192 | 4657 | 16 | 4657 | 21 | 5 | 23.8095 | |
| bgallagher-sentieon | SNP | tv | HG002compoundhet | hetalt | 99.7674 | 99.5360 | 100.0000 | 22.4231 | 858 | 4 | 858 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | HG002compoundhet | homalt | 99.8524 | 99.9115 | 99.7933 | 42.7775 | 3385 | 3 | 3380 | 7 | 6 | 85.7143 | |
| bgallagher-sentieon | SNP | * | HG002compoundhet | * | 99.8063 | 99.8025 | 99.8102 | 41.0420 | 25771 | 51 | 25764 | 49 | 25 | 51.0204 | |
| bgallagher-sentieon | SNP | * | HG002compoundhet | het | 99.7460 | 99.7320 | 99.7601 | 45.7386 | 14140 | 38 | 14138 | 34 | 11 | 32.3529 | |
| bgallagher-sentieon | SNP | * | HG002compoundhet | hetalt | 99.7674 | 99.5360 | 100.0000 | 22.4231 | 858 | 4 | 858 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | HG002compoundhet | homalt | 99.8887 | 99.9165 | 99.8609 | 34.8774 | 10773 | 9 | 10768 | 15 | 14 | 93.3333 | |
| bgallagher-sentieon | SNP | ti | HG002compoundhet | * | 99.8512 | 99.8226 | 99.8798 | 35.5355 | 17447 | 31 | 17445 | 21 | 14 | 66.6667 | |
| bgallagher-sentieon | SNP | ti | HG002compoundhet | het | 99.8158 | 99.7685 | 99.8631 | 39.5979 | 9483 | 22 | 9481 | 13 | 6 | 46.1538 | |
| bgallagher-sentieon | SNP | ti | HG002compoundhet | hetalt | 99.7403 | 99.4819 | 100.0000 | 21.8453 | 576 | 3 | 576 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | HG002compoundhet | homalt | 99.9053 | 99.9189 | 99.8918 | 30.4822 | 7388 | 6 | 7388 | 8 | 8 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | HG002compoundhet | * | 95.6183 | 100.0000 | 91.6045 | 83.2080 | 1 | 0 | 491 | 45 | 7 | 15.5556 | |
| cchapple-custom | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 91.5709 | 83.0574 | 0 | 0 | 478 | 44 | 6 | 13.6364 | |
| cchapple-custom | INDEL | C1_5 | HG002compoundhet | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 92.8571 | 87.3874 | 0 | 0 | 13 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 39.2593 | 0 | 0 | 0 | 82 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 35.9551 | 0 | 0 | 0 | 57 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 62.5000 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 42.1053 | 0 | 0 | 0 | 22 | 0 | 0.0000 | ||
| astatham-gatk | SNP | ti | HG002compoundhet | * | 99.2746 | 98.6669 | 99.8899 | 35.7263 | 17245 | 233 | 17243 | 19 | 18 | 94.7368 | |
| astatham-gatk | SNP | ti | HG002compoundhet | het | 98.7553 | 97.6644 | 99.8709 | 39.9910 | 9283 | 222 | 9281 | 12 | 11 | 91.6667 | |
| astatham-gatk | SNP | ti | HG002compoundhet | hetalt | 99.8270 | 99.6546 | 100.0000 | 21.9215 | 577 | 2 | 577 | 0 | 0 | ||
| astatham-gatk | SNP | ti | HG002compoundhet | homalt | 99.8918 | 99.8783 | 99.9053 | 30.4740 | 7385 | 9 | 7385 | 7 | 7 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | HG002compoundhet | * | 95.6905 | 94.4340 | 96.9809 | 66.6013 | 11554 | 681 | 11564 | 360 | 339 | 94.1667 | |
| asubramanian-gatk | INDEL | D1_5 | HG002compoundhet | het | 95.2389 | 96.5856 | 93.9292 | 78.7201 | 1669 | 59 | 1671 | 108 | 103 | 95.3704 | |
| asubramanian-gatk | INDEL | D1_5 | HG002compoundhet | hetalt | 96.4959 | 93.9311 | 99.2046 | 59.5968 | 9596 | 620 | 9604 | 77 | 71 | 92.2078 | |
| asubramanian-gatk | INDEL | D1_5 | HG002compoundhet | homalt | 76.5563 | 99.3127 | 62.2845 | 86.2762 | 289 | 2 | 289 | 175 | 165 | 94.2857 | |
| asubramanian-gatk | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 100.0000 | 0.0000 | 46.8750 | 1 | 0 | 0 | 136 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 51.4620 | 0 | 0 | 0 | 83 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | HG002compoundhet | hetalt | 0.0000 | 100.0000 | 0.0000 | 58.3333 | 1 | 0 | 0 | 5 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 34.2466 | 0 | 0 | 0 | 48 | 0 | 0.0000 | ||
| astatham-gatk | SNP | tv | HG002compoundhet | * | 99.1767 | 98.5543 | 99.8069 | 49.0836 | 8794 | 129 | 8789 | 17 | 16 | 94.1176 | |
| astatham-gatk | SNP | tv | HG002compoundhet | het | 98.5818 | 97.4321 | 99.7590 | 55.5988 | 4553 | 120 | 4553 | 11 | 11 | 100.0000 | |
| astatham-gatk | SNP | tv | HG002compoundhet | hetalt | 99.7674 | 99.5360 | 100.0000 | 22.4932 | 858 | 4 | 858 | 0 | 0 | ||
| astatham-gatk | SNP | tv | HG002compoundhet | homalt | 99.8376 | 99.8524 | 99.8227 | 42.7314 | 3383 | 5 | 3378 | 6 | 5 | 83.3333 | |
| asubramanian-gatk | INDEL | * | HG002compoundhet | * | 93.4362 | 93.2377 | 93.6356 | 65.8907 | 27934 | 2026 | 27836 | 1892 | 1575 | 83.2452 | |
| asubramanian-gatk | INDEL | * | HG002compoundhet | het | 90.4926 | 96.2872 | 85.3557 | 79.1653 | 3942 | 152 | 3707 | 636 | 459 | 72.1698 | |
| asubramanian-gatk | INDEL | * | HG002compoundhet | hetalt | 95.7396 | 92.5814 | 99.1208 | 52.6709 | 23312 | 1868 | 23449 | 208 | 188 | 90.3846 | |
| asubramanian-gatk | INDEL | * | HG002compoundhet | homalt | 56.3380 | 99.1254 | 39.3519 | 82.7957 | 680 | 6 | 680 | 1048 | 928 | 88.5496 | |
| asubramanian-gatk | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 48.1481 | 0 | 0 | 0 | 28 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 44.8276 | 0 | 0 | 0 | 16 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 20.0000 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 60.0000 | 0 | 0 | 0 | 8 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | D16_PLUS | HG002compoundhet | * | 94.4206 | 93.9769 | 94.8685 | 35.6370 | 2200 | 141 | 2200 | 119 | 109 | 91.5966 | |
| asubramanian-gatk | INDEL | D16_PLUS | HG002compoundhet | het | 87.8383 | 97.0370 | 80.2326 | 59.6717 | 393 | 12 | 276 | 68 | 64 | 94.1176 | |