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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1560 1561 1562 1563 1564 1565 1566 1567 1568 ... 1720 1721 » 78151-78200 / 86044 show all
jlack-gatk	INDEL	I1_5	HG002compoundhet	hetalt	94.9037	90.3820	99.9017	57.2515	10102	1075	10162	10	9	90.0000
jlack-gatk	INDEL	I1_5	HG002compoundhet	homalt	60.9506	99.3921	43.9516	87.9475	327	2	327	417	414	99.2806
jlack-gatk	SNP	tv	HG002compoundhet	*	99.3236	99.5965	99.0521	49.7619	8887	36	8882	85	24	28.2353
jlack-gatk	SNP	tv	HG002compoundhet	het	98.9462	99.4650	98.4329	56.5753	4648	25	4648	74	14	18.9189
jlack-gatk	SNP	tv	HG002compoundhet	hetalt	99.6512	99.4200	99.8834	22.4231	857	5	857	1	1	100.0000
jlack-gatk	SNP	tv	HG002compoundhet	homalt	99.7638	99.8229	99.7048	42.2900	3382	6	3377	10	9	90.0000
jlack-gatk	INDEL	I6_15	HG002compoundhet	*	90.8429	89.0155	92.7469	37.7522	7812	964	7813	611	606	99.1817
jlack-gatk	INDEL	I6_15	HG002compoundhet	het	73.9198	96.6346	59.8513	81.3194	201	7	161	108	105	97.2222
jlack-gatk	INDEL	I6_15	HG002compoundhet	hetalt	94.0390	88.7900	99.9475	29.7817	7580	957	7621	4	4	100.0000
jlack-gatk	INDEL	I6_15	HG002compoundhet	homalt	11.0517	100.0000	5.8491	57.0502	31	0	31	499	497	99.5992
jlack-gatk	SNP	*	HG002compoundhet	*	99.5417	99.7018	99.3822	42.1778	25745	77	25738	160	46	28.7500
jlack-gatk	SNP	*	HG002compoundhet	het	99.3003	99.6050	98.9974	47.5779	14122	56	14120	143	30	20.9790
jlack-gatk	SNP	*	HG002compoundhet	hetalt	99.6512	99.4200	99.8834	22.4231	857	5	857	1	1	100.0000
jlack-gatk	SNP	*	HG002compoundhet	homalt	99.8516	99.8516	99.8515	34.5857	10766	16	10761	16	15	93.7500
jlack-gatk	SNP	ti	HG002compoundhet	*	99.6570	99.7425	99.5716	36.7466	17433	45	17431	75	22	29.3333
jlack-gatk	SNP	ti	HG002compoundhet	het	99.4749	99.6739	99.2768	41.5881	9474	31	9472	69	16	23.1884
jlack-gatk	SNP	ti	HG002compoundhet	hetalt	99.6534	99.3092	100.0000	21.8750	575	4	575	0	0
jlack-gatk	SNP	ti	HG002compoundhet	homalt	99.8918	99.8648	99.9188	30.3225	7384	10	7384	6	6	100.0000
jli-custom	INDEL	C16_PLUS	HG002compoundhet	*		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C16_PLUS	HG002compoundhet	het		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C16_PLUS	HG002compoundhet	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C16_PLUS	HG002compoundhet	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	D1_5	HG002compoundhet	*	93.7462	92.1291	95.4211	64.7145	11272	963	11274	541	497	91.8669
jlack-gatk	INDEL	D1_5	HG002compoundhet	het	92.3786	97.8009	87.5259	78.5190	1690	38	1691	241	200	82.9876
jlack-gatk	INDEL	D1_5	HG002compoundhet	hetalt	95.0540	90.9554	99.5394	57.6003	9292	924	9293	43	40	93.0233
jlack-gatk	INDEL	D1_5	HG002compoundhet	homalt	69.2124	99.6564	53.0165	77.8632	290	1	290	257	257	100.0000
jlack-gatk	INDEL	D6_15	HG002compoundhet	*	92.1390	91.0641	93.2396	35.4470	8224	807	8220	596	552	92.6174
jlack-gatk	INDEL	D6_15	HG002compoundhet	het	80.7008	96.6121	69.2893	65.6695	827	29	819	363	325	89.5317
jlack-gatk	INDEL	D6_15	HG002compoundhet	hetalt	94.7748	90.4552	99.5278	24.3596	7373	778	7377	35	30	85.7143
jlack-gatk	INDEL	D6_15	HG002compoundhet	homalt	19.5122	100.0000	10.8108	46.5060	24	0	24	198	197	99.4949
jlack-gatk	INDEL	D16_PLUS	HG002compoundhet	*	92.8541	92.1401	93.5792	35.3980	2157	184	2157	148	143	96.6216
jlack-gatk	INDEL	D16_PLUS	HG002compoundhet	het	80.6922	97.5309	68.8119	59.1507	395	10	278	126	121	96.0317
jlack-gatk	INDEL	D16_PLUS	HG002compoundhet	hetalt	95.0565	90.9751	99.5213	25.2782	1754	174	1871	9	9	100.0000
jlack-gatk	INDEL	D16_PLUS	HG002compoundhet	homalt	55.1724	100.0000	38.0952	66.6667	8	0	8	13	13	100.0000
hfeng-pmm3	SNP	tv	HG002compoundhet	*	97.0510	94.4189	99.8341	47.0669	8425	498	8423	14	7	50.0000
hfeng-pmm3	SNP	tv	HG002compoundhet	het	94.3711	89.5142	99.7852	53.0848	4183	490	4181	9	2	22.2222
hfeng-pmm3	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	22.8700	860	2	860	0	0
hfeng-pmm3	SNP	tv	HG002compoundhet	homalt	99.8376	99.8229	99.8524	42.5250	3382	6	3382	5	5	100.0000
jlack-gatk	INDEL	*	HG002compoundhet	*	91.0082	90.7410	91.2769	62.3551	27186	2774	27070	2587	2465	95.2841
jlack-gatk	INDEL	*	HG002compoundhet	het	87.1214	97.4108	78.7981	78.1044	3988	106	3750	1009	902	89.3954
jlack-gatk	INDEL	C1_5	HG002compoundhet	*	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
jlack-gatk	INDEL	C1_5	HG002compoundhet	het		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C1_5	HG002compoundhet	hetalt	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
jlack-gatk	INDEL	C1_5	HG002compoundhet	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	HG002compoundhet	*		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	HG002compoundhet	het		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	HG002compoundhet	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	HG002compoundhet	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	*	HG002compoundhet	hetalt	94.2807	89.4162	99.7049	50.9823	22515	2665	22637	67	62	92.5373
jlack-gatk	INDEL	*	HG002compoundhet	homalt	47.4306	99.5627	31.1304	79.5488	683	3	683	1511	1501	99.3382

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