PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7751-7800 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.2143 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l250_m2_e1 | homalt | 96.5517 | 96.5517 | 96.5517 | 95.0491 | 112 | 4 | 112 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 8 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I6_15 | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 97.7778 | 100.0000 | 95.6522 | 97.5242 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 96.5517 | 100.0000 | 93.3333 | 97.8198 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3333 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.3855 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 98.4783 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 98.4985 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.1308 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 92.1519 | 98.3784 | 86.6667 | 96.9213 | 182 | 3 | 182 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 89.7059 | 100.0000 | 81.3333 | 97.2355 | 122 | 0 | 122 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.4048 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e1 | homalt | 99.1597 | 98.3333 | 100.0000 | 95.1915 | 59 | 1 | 59 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 94.0171 | 96.4912 | 91.6667 | 97.5093 | 110 | 4 | 110 | 10 | 2 | 20.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 91.1765 | 93.9394 | 88.5714 | 98.1096 | 62 | 4 | 62 | 8 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3333 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 95.1759 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | * | 83.3333 | 100.0000 | 71.4286 | 98.3133 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 98.4709 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.5915 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l250_m2_e1 | * | 70.8260 | 55.7155 | 97.1828 | 96.2381 | 4450 | 3537 | 4450 | 129 | 10 | 7.7519 | |
| ckim-gatk | SNP | * | map_l250_m2_e1 | het | 74.0542 | 60.2394 | 96.0909 | 96.7655 | 3171 | 2093 | 3171 | 129 | 10 | 7.7519 | |
| ckim-gatk | SNP | * | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.2366 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l250_m2_e1 | homalt | 63.9640 | 47.0199 | 100.0000 | 93.4676 | 1278 | 1440 | 1278 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l250_m2_e1 | * | 71.4464 | 56.3436 | 97.6109 | 96.1177 | 2860 | 2216 | 2860 | 70 | 9 | 12.8571 | |
| ckim-gatk | SNP | ti | map_l250_m2_e1 | het | 74.6885 | 60.8669 | 96.6314 | 96.6914 | 2008 | 1291 | 2008 | 70 | 9 | 12.8571 | |
| ckim-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.7654 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l250_m2_e1 | homalt | 64.8875 | 48.0248 | 100.0000 | 93.2374 | 851 | 921 | 851 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 99.4012 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.9130 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | * | map_l250_m2_e1 | * | 57.7232 | 51.3514 | 65.9004 | 97.5500 | 171 | 162 | 172 | 89 | 44 | 49.4382 | |
| ciseli-custom | INDEL | * | map_l250_m2_e1 | het | 57.5214 | 54.0284 | 61.4973 | 97.7292 | 114 | 97 | 115 | 72 | 33 | 45.8333 | |
| ciseli-custom | INDEL | * | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 6 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | map_l250_m2_e1 | homalt | 60.0000 | 49.1379 | 77.0270 | 96.9384 | 57 | 59 | 57 | 17 | 11 | 64.7059 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | * | 50.0000 | 40.0000 | 66.6667 | 97.8723 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 98.7342 | 1 | 2 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 66.6667 | 100.0000 | 50.0000 | 96.7742 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | tv | map_l250_m2_e1 | * | 95.6819 | 95.8162 | 95.5479 | 90.3656 | 2794 | 122 | 2790 | 130 | 24 | 18.4615 | |
| cchapple-custom | SNP | tv | map_l250_m2_e1 | het | 94.5928 | 95.6743 | 93.5356 | 91.6445 | 1880 | 85 | 1881 | 130 | 24 | 18.4615 | |
| cchapple-custom | SNP | tv | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l250_m2_e1 | homalt | 98.0054 | 96.0888 | 100.0000 | 85.4327 | 909 | 37 | 909 | 0 | 0 | ||