PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
77801-77850 / 86044 show all
eyeh-varpipeINDELD16_PLUSHG002compoundhet*
28.2801
22.7680
37.3134
28.0307
5331808525882881
99.8866
eyeh-varpipeINDELD16_PLUSHG002compoundhethet
53.8274
51.6049
56.2500
59.7990
209196453535
100.0000
eyeh-varpipeINDELD16_PLUSHG002compoundhethetalt
28.4846
16.7531
95.0298
30.9066
32316054782525
100.0000
eyeh-varpipeINDELD16_PLUSHG002compoundhethomalt
0.4762
12.5000
0.2427
19.8444
172822821
99.8783
eyeh-varpipeINDELI16_PLUSHG002compoundhet*
16.3932
10.4060
38.6054
37.9092
2231920227361360
99.7230
eyeh-varpipeINDELI16_PLUSHG002compoundhethet
2.3810
4.2553
1.6529
50.2058
2452119119
100.0000
eyeh-varpipeINDELI16_PLUSHG002compoundhethetalt
18.8882
10.4634
96.9432
40.6736
219187422277
100.0000
eyeh-varpipeINDELI16_PLUSHG002compoundhethomalt
2.4742
66.6667
1.2605
25.1572
213235234
99.5745
eyeh-varpipeINDELI1_5HG002compoundhet*
54.5656
48.0495
63.1261
63.8199
59376419596134823440
98.7938
eyeh-varpipeINDELI1_5HG002compoundhethet
74.0633
83.6471
66.4499
67.5390
711139511258225
87.2093
eyeh-varpipeINDELI1_5HG002compoundhethetalt
60.8513
43.9832
98.7067
61.4827
4916626151906865
95.5882
eyeh-varpipeINDELI1_5HG002compoundhethomalt
14.0848
94.2249
7.6112
66.1111
3101926031563150
99.8099
eyeh-varpipeINDELI6_15HG002compoundhet*
36.3679
28.3500
50.7094
30.4777
24886288250224322425
99.7122
eyeh-varpipeINDELI6_15HG002compoundhethet
24.7604
59.6154
15.6250
55.8621
1248470378375
99.2063
eyeh-varpipeINDELI6_15HG002compoundhethetalt
42.7960
27.4218
97.4089
29.0841
2341619624066463
98.4375
eyeh-varpipeINDELI6_15HG002compoundhethomalt
2.5353
74.1935
1.2897
22.4317
2382619901987
99.8492
eyeh-varpipeINDELD6_15HG002compoundhet*
39.7758
35.3560
45.4585
32.6471
31935838313837653754
99.7078
eyeh-varpipeINDELD6_15HG002compoundhethet
60.1947
80.0234
48.2412
75.0000
68517196103100
97.0874
eyeh-varpipeINDELD6_15HG002compoundhethetalt
46.3719
30.5239
96.4480
28.8641
248856633014111110
99.0991
eyeh-varpipeINDELD6_15HG002compoundhethomalt
1.5501
83.3333
0.7823
29.2688
2042835513544
99.8029
eyeh-varpipeINDELC6_15HG002compoundhet*
0.0000
0.0000
65.6489
85.9893
00864539
86.6667
eyeh-varpipeINDELC6_15HG002compoundhethet
0.0000
0.0000
97.7444
00032
66.6667
eyeh-varpipeINDELC6_15HG002compoundhethetalt
0.0000
0.0000
91.3978
83.9655
008587
87.5000
eyeh-varpipeINDELC6_15HG002compoundhethomalt
0.0000
0.0000
2.8571
84.2342
0013430
88.2353
eyeh-varpipeINDELD1_5HG002compoundhet*
54.4680
50.0613
59.7255
65.1711
61256110609241084053
98.6611
eyeh-varpipeINDELD1_5HG002compoundhethet
84.7249
91.5509
78.8462
70.2988
158214653314397
67.8322
eyeh-varpipeINDELD1_5HG002compoundhethetalt
58.5449
41.7091
98.1717
64.4031
4261595553169995
95.9596
eyeh-varpipeINDELD1_5HG002compoundhethomalt
11.1474
96.9072
5.9138
65.1721
282924338663861
99.8707
ckim-isaacSNPtvHG002compoundhet*
85.3990
78.0567
94.2659
45.8825
696519587217439382
87.0159
ckim-isaacSNPtvHG002compoundhethet
84.5719
74.3206
98.1038
53.1755
3473120037257217
23.6111
ckim-isaacSNPtvHG002compoundhethetalt
96.5807
93.3875
100.0000
18.9325
8055780500
ckim-isaacSNPtvHG002compoundhethomalt
88.3010
79.3093
99.5923
36.8889
268770126871111
100.0000
ckim-isaacINDELI16_PLUSHG002compoundhet*
61.2497
48.1568
84.1205
44.7593
103211111033195178
91.2821
ckim-isaacINDELI16_PLUSHG002compoundhethet
19.1083
31.9149
13.6364
72.1014
153221133118
88.7218
ckim-isaacINDELI16_PLUSHG002compoundhethetalt
65.1901
48.5428
99.2149
33.3115
10161077101187
87.5000
ckim-isaacINDELI16_PLUSHG002compoundhethomalt
3.4483
33.3333
1.8182
61.5385
1215453
98.1481
ckim-isaacINDELI1_5HG002compoundhet*
86.4991
81.9764
91.5499
51.1004
10129222710130935794
84.9198
ckim-isaacINDELI1_5HG002compoundhethet
60.5332
77.1765
49.7948
74.1605
656194728734607
82.6975
ckim-isaacINDELI1_5HG002compoundhethetalt
90.1858
82.6071
99.2955
37.7647
9233194491626555
84.6154
ckim-isaacINDELI1_5HG002compoundhethomalt
68.0851
72.9483
63.8298
82.4627
24089240136132
97.0588
ckim-vqsrINDELC16_PLUSHG002compoundhet*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSHG002compoundhethet
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSHG002compoundhethetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSHG002compoundhethomalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtiHG002compoundhet*
88.7627
82.1776
96.4952
32.6037
14363311514647532421
79.1353
ckim-isaacSNPtiHG002compoundhethet
88.4015
80.2104
98.4558
36.9008
76241881790612419
15.3226
ckim-isaacSNPtiHG002compoundhethetalt
96.2366
92.7461
100.0000
18.6364
5374253700
ckim-isaacSNPtiHG002compoundhethomalt
91.0386
83.8788
99.5347
26.2921
6202119262032924
82.7586
ckim-isaacINDELI6_15HG002compoundhet*
78.6319
69.8154
89.9971
31.6672
612726496127681634
93.0984
ckim-isaacINDELI6_15HG002compoundhethet
32.8633
69.2308
21.5453
64.8197
14464145528493
93.3712