PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
77651-77700 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I6_15 | HG002compoundhet | hetalt | 95.3278 | 91.5310 | 99.4533 | 27.1869 | 7814 | 723 | 7823 | 43 | 37 | 86.0465 | |
| egarrison-hhga | INDEL | I6_15 | HG002compoundhet | homalt | 19.2440 | 90.3226 | 10.7692 | 63.7883 | 28 | 3 | 28 | 232 | 206 | 88.7931 | |
| egarrison-hhga | SNP | tv | HG002compoundhet | * | 98.7023 | 98.0164 | 99.3979 | 47.2112 | 8746 | 177 | 8749 | 53 | 39 | 73.5849 | |
| egarrison-hhga | SNP | tv | HG002compoundhet | het | 98.2001 | 96.8971 | 99.5386 | 52.4849 | 4528 | 145 | 4530 | 21 | 10 | 47.6190 | |
| egarrison-hhga | SNP | tv | HG002compoundhet | hetalt | 99.5928 | 99.3039 | 99.8833 | 23.6185 | 856 | 6 | 856 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | HG002compoundhet | homalt | 99.1596 | 99.2326 | 99.0866 | 43.1871 | 3362 | 26 | 3363 | 31 | 28 | 90.3226 | |
| egarrison-hhga | SNP | ti | HG002compoundhet | * | 99.0004 | 98.5925 | 99.4116 | 34.5800 | 17232 | 246 | 17233 | 102 | 75 | 73.5294 | |
| egarrison-hhga | SNP | ti | HG002compoundhet | het | 98.7211 | 97.8643 | 99.5931 | 37.6968 | 9302 | 203 | 9300 | 38 | 21 | 55.2632 | |
| egarrison-hhga | SNP | ti | HG002compoundhet | hetalt | 99.5663 | 99.1364 | 100.0000 | 22.9530 | 574 | 5 | 574 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | HG002compoundhet | homalt | 99.3116 | 99.4861 | 99.1378 | 31.0451 | 7356 | 38 | 7359 | 64 | 54 | 84.3750 | |
| egarrison-hhga | SNP | * | HG002compoundhet | * | 98.8848 | 98.3812 | 99.3937 | 39.7483 | 25404 | 418 | 25408 | 155 | 114 | 73.5484 | |
| egarrison-hhga | SNP | * | HG002compoundhet | het | 98.5499 | 97.5455 | 99.5752 | 43.4625 | 13830 | 348 | 13830 | 59 | 31 | 52.5424 | |
| egarrison-hhga | SNP | * | HG002compoundhet | hetalt | 99.5928 | 99.3039 | 99.8833 | 23.6185 | 856 | 6 | 856 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | HG002compoundhet | homalt | 99.2639 | 99.4064 | 99.1218 | 35.3785 | 10718 | 64 | 10722 | 95 | 82 | 86.3158 | |
| eyeh-varpipe | INDEL | C1_5 | HG002compoundhet | * | 90.1057 | 100.0000 | 81.9930 | 83.6384 | 1 | 0 | 469 | 103 | 87 | 84.4660 | |
| eyeh-varpipe | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 39.2857 | 93.7639 | 0 | 0 | 11 | 17 | 14 | 82.3529 | |
| eyeh-varpipe | INDEL | C1_5 | HG002compoundhet | hetalt | 95.5961 | 100.0000 | 91.5638 | 80.0247 | 1 | 0 | 445 | 41 | 39 | 95.1220 | |
| eyeh-varpipe | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 22.4138 | 90.5537 | 0 | 0 | 13 | 45 | 34 | 75.5556 | |
| egarrison-hhga | INDEL | I1_5 | HG002compoundhet | * | 96.1134 | 95.0631 | 97.1871 | 62.4825 | 11746 | 610 | 11747 | 340 | 264 | 77.6471 | |
| egarrison-hhga | INDEL | I1_5 | HG002compoundhet | het | 88.5536 | 91.2941 | 85.9729 | 82.4603 | 776 | 74 | 760 | 124 | 68 | 54.8387 | |
| egarrison-hhga | INDEL | I1_5 | HG002compoundhet | hetalt | 97.3530 | 95.2492 | 99.5519 | 56.2316 | 10646 | 531 | 10663 | 48 | 44 | 91.6667 | |
| egarrison-hhga | INDEL | I1_5 | HG002compoundhet | homalt | 78.9281 | 98.4802 | 65.8537 | 81.8115 | 324 | 5 | 324 | 168 | 152 | 90.4762 | |
| egarrison-hhga | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | D1_5 | HG002compoundhet | * | 69.0217 | 68.1406 | 69.9260 | 60.9500 | 8337 | 3898 | 8410 | 3617 | 3521 | 97.3459 | |
| egarrison-hhga | INDEL | D1_5 | HG002compoundhet | het | 51.9684 | 88.9468 | 36.7077 | 50.8341 | 1537 | 191 | 1969 | 3395 | 3320 | 97.7909 | |
| egarrison-hhga | INDEL | D1_5 | HG002compoundhet | hetalt | 77.6385 | 63.8117 | 99.1149 | 65.8609 | 6519 | 3697 | 6159 | 55 | 48 | 87.2727 | |
| egarrison-hhga | INDEL | D1_5 | HG002compoundhet | homalt | 76.1097 | 96.5636 | 62.8062 | 73.3847 | 281 | 10 | 282 | 167 | 153 | 91.6168 | |
| egarrison-hhga | INDEL | D6_15 | HG002compoundhet | * | 61.1341 | 52.4527 | 73.2591 | 39.3063 | 4737 | 4294 | 4871 | 1778 | 1713 | 96.3442 | |
| egarrison-hhga | INDEL | D6_15 | HG002compoundhet | het | 59.7254 | 89.0187 | 44.9378 | 47.8055 | 762 | 94 | 1336 | 1637 | 1603 | 97.9230 | |
| egarrison-hhga | INDEL | D6_15 | HG002compoundhet | hetalt | 65.0591 | 48.4726 | 98.9014 | 28.1522 | 3951 | 4200 | 3511 | 39 | 34 | 87.1795 | |
| egarrison-hhga | INDEL | D6_15 | HG002compoundhet | homalt | 32.0000 | 100.0000 | 19.0476 | 60.3774 | 24 | 0 | 24 | 102 | 76 | 74.5098 | |
| egarrison-hhga | INDEL | I16_PLUS | HG002compoundhet | * | 86.9177 | 82.7345 | 91.5464 | 49.7800 | 1773 | 370 | 1776 | 164 | 118 | 71.9512 | |
| egarrison-hhga | INDEL | I16_PLUS | HG002compoundhet | het | 50.9653 | 70.2128 | 40.0000 | 86.0681 | 33 | 14 | 36 | 54 | 38 | 70.3704 | |
| egarrison-hhga | INDEL | I16_PLUS | HG002compoundhet | hetalt | 90.3511 | 82.9909 | 99.1438 | 40.2252 | 1737 | 356 | 1737 | 15 | 11 | 73.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | HG002compoundhet | homalt | 5.9406 | 100.0000 | 3.0612 | 65.7343 | 3 | 0 | 3 | 95 | 69 | 72.6316 | |
| egarrison-hhga | INDEL | D16_PLUS | HG002compoundhet | * | 61.7860 | 49.7651 | 81.4641 | 41.2623 | 1165 | 1176 | 1213 | 276 | 256 | 92.7536 | |
| egarrison-hhga | INDEL | D16_PLUS | HG002compoundhet | het | 73.4421 | 80.9877 | 67.1827 | 49.1339 | 328 | 77 | 434 | 212 | 201 | 94.8113 | |
| egarrison-hhga | INDEL | D16_PLUS | HG002compoundhet | hetalt | 60.1689 | 43.1017 | 99.6134 | 31.8701 | 831 | 1097 | 773 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | HG002compoundhet | homalt | 16.0000 | 75.0000 | 8.9552 | 46.8254 | 6 | 2 | 6 | 61 | 52 | 85.2459 | |
| egarrison-hhga | INDEL | * | HG002compoundhet | * | 77.4600 | 76.5788 | 78.3617 | 71.3882 | 22943 | 7017 | 23485 | 6485 | 6131 | 94.5412 | |
| egarrison-hhga | INDEL | * | HG002compoundhet | het | 60.4981 | 88.2511 | 46.0244 | 58.9093 | 3613 | 481 | 4706 | 5519 | 5300 | 96.0319 | |
| egarrison-hhga | INDEL | * | HG002compoundhet | hetalt | 84.8570 | 74.1223 | 99.2275 | 55.5672 | 18664 | 6516 | 18112 | 141 | 123 | 87.2340 | |
| egarrison-hhga | INDEL | * | HG002compoundhet | homalt | 61.2199 | 97.0845 | 44.7051 | 74.4521 | 666 | 20 | 667 | 825 | 708 | 85.8182 | |
| egarrison-hhga | INDEL | C1_5 | HG002compoundhet | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | HG002compoundhet | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||