PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
76901-76950 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.2799 | 97.7540 | 96.8105 | 66.5390 | 4657 | 107 | 4735 | 156 | 5 | 3.2051 | |
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.2882 | 97.5464 | 95.0621 | 69.7999 | 2942 | 74 | 2984 | 155 | 4 | 2.5807 | |
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0190 | 98.1121 | 99.9429 | 58.3888 | 1715 | 33 | 1750 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 77.5746 | 65.5340 | 95.0355 | 74.5946 | 135 | 71 | 134 | 7 | 5 | 71.4286 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 75.5891 | 62.1053 | 96.5517 | 74.3363 | 59 | 36 | 56 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 81.4336 | 70.9302 | 95.5882 | 72.4696 | 61 | 25 | 65 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 70.9091 | 60.0000 | 86.6667 | 81.7073 | 15 | 10 | 13 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 72.4419 | 70.6939 | 74.2785 | 64.5876 | 7121 | 2952 | 7026 | 2433 | 2324 | 95.5199 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 73.6558 | 85.1238 | 64.9109 | 67.0798 | 3439 | 601 | 3241 | 1752 | 1680 | 95.8904 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 58.6637 | 41.7103 | 98.8365 | 49.0818 | 1595 | 2229 | 1699 | 20 | 18 | 90.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 84.1988 | 94.4771 | 75.9374 | 66.3688 | 2087 | 122 | 2086 | 661 | 626 | 94.7050 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 96.9882 | 97.7573 | 96.2312 | 67.1549 | 1482 | 34 | 1532 | 60 | 2 | 3.3333 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.8674 | 97.4798 | 94.3074 | 69.5552 | 967 | 25 | 994 | 60 | 2 | 3.3333 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.1338 | 98.2824 | 100.0000 | 60.8029 | 515 | 9 | 537 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.4464 | 92.3899 | 98.7120 | 46.6442 | 3630 | 299 | 3602 | 47 | 34 | 72.3404 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.6005 | 95.5255 | 97.6999 | 63.9558 | 918 | 43 | 892 | 21 | 10 | 47.6190 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.9326 | 91.0397 | 99.1732 | 34.1898 | 2154 | 212 | 2159 | 18 | 18 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5396 | 92.6910 | 98.5689 | 43.9880 | 558 | 44 | 551 | 8 | 6 | 75.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.0000 | 97.5689 | 0 | 0 | 12 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 80.0000 | 97.5248 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 98.0952 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.0000 | 0 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.1956 | 90.5120 | 98.1916 | 59.9330 | 3606 | 378 | 3638 | 67 | 32 | 47.7612 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.2272 | 90.2128 | 96.4502 | 72.2490 | 1272 | 138 | 1277 | 47 | 13 | 27.6596 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.4727 | 88.3644 | 99.2078 | 40.1968 | 1610 | 212 | 1628 | 13 | 12 | 92.3077 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.6456 | 96.2766 | 99.0541 | 57.2748 | 724 | 28 | 733 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2071 | 90.0993 | 98.7075 | 49.5392 | 3540 | 389 | 3513 | 46 | 33 | 71.7391 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.5497 | 95.4214 | 97.7049 | 66.6424 | 917 | 44 | 894 | 21 | 10 | 47.6190 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.4644 | 86.6019 | 99.1783 | 36.1223 | 2049 | 317 | 2052 | 17 | 17 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9514 | 95.3488 | 98.6087 | 46.3119 | 574 | 28 | 567 | 8 | 6 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.6583 | 87.5470 | 98.4034 | 64.1001 | 1863 | 265 | 1849 | 30 | 27 | 90.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.7242 | 88.2707 | 97.6510 | 77.3039 | 587 | 78 | 582 | 14 | 11 | 78.5714 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.3465 | 85.0256 | 98.6826 | 42.3343 | 829 | 146 | 824 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.1018 | 91.5984 | 98.8839 | 61.3793 | 447 | 41 | 443 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 75.2837 | 62.1359 | 95.4887 | 76.4184 | 128 | 78 | 127 | 6 | 4 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 73.1672 | 58.9474 | 96.4286 | 75.9657 | 56 | 39 | 54 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 79.5056 | 67.4419 | 96.8254 | 74.5968 | 58 | 28 | 61 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 67.7419 | 56.0000 | 85.7143 | 83.1325 | 14 | 11 | 12 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.3865 | 92.3996 | 98.5731 | 65.0648 | 1702 | 140 | 1727 | 25 | 7 | 28.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.0746 | 93.3535 | 96.8603 | 74.0318 | 618 | 44 | 617 | 20 | 2 | 10.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.6357 | 90.3010 | 99.4076 | 53.2928 | 810 | 87 | 839 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.3842 | 96.8198 | 100.0000 | 64.1060 | 274 | 9 | 271 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7214 | 91.1483 | 98.5861 | 64.1475 | 762 | 74 | 767 | 11 | 6 | 54.5455 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.4296 | 89.8785 | 97.2727 | 73.4300 | 222 | 25 | 214 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.1777 | 91.1321 | 99.5992 | 56.5331 | 483 | 47 | 497 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.7552 | 96.6102 | 94.9153 | 69.5876 | 57 | 2 | 56 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.7782 | 98.2578 | 97.3034 | 68.5775 | 4681 | 83 | 4763 | 132 | 5 | 3.7879 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.0035 | 98.2095 | 95.8267 | 71.5438 | 2962 | 54 | 3008 | 131 | 4 | 3.0534 | |