PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
76651-76700 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.6638 | 99.3464 | 94.1222 | 70.3644 | 1216 | 8 | 1217 | 76 | 58 | 76.3158 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 61.1726 | 50.2392 | 78.1885 | 71.6457 | 420 | 416 | 423 | 118 | 117 | 99.1525 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 71.9478 | 78.1377 | 66.6667 | 74.2938 | 193 | 54 | 182 | 91 | 90 | 98.9011 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 48.6822 | 32.4528 | 97.3822 | 61.4141 | 172 | 358 | 186 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 80.8824 | 93.2203 | 71.4286 | 78.0627 | 55 | 4 | 55 | 22 | 22 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.9832 | 96.0537 | 95.9128 | 70.7498 | 4576 | 188 | 4576 | 195 | 106 | 54.3590 | |
| mlin-fermikit | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.8650 | 94.1645 | 97.6281 | 70.2647 | 2840 | 176 | 2840 | 69 | 8 | 11.5942 | |
| mlin-fermikit | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.1773 | 99.3135 | 93.2331 | 71.4592 | 1736 | 12 | 1736 | 126 | 98 | 77.7778 | |
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 33.3333 | 97.2222 | 0 | 0 | 1 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 98.7805 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 66.6667 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 95.6522 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.4390 | 98.0603 | 98.8206 | 66.9267 | 3185 | 63 | 3184 | 38 | 10 | 26.3158 | |
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.9401 | 97.5296 | 98.3541 | 69.0300 | 1974 | 50 | 1972 | 33 | 5 | 15.1515 | |
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.2625 | 98.9379 | 99.5892 | 62.6573 | 1211 | 13 | 1212 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.8073 | 97.0976 | 98.5274 | 67.7670 | 1472 | 44 | 1472 | 22 | 11 | 50.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.4054 | 96.4718 | 98.3573 | 68.7720 | 957 | 35 | 958 | 16 | 6 | 37.5000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.5635 | 98.2824 | 98.8462 | 65.4025 | 515 | 9 | 514 | 6 | 5 | 83.3333 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 82.9227 | 78.1124 | 88.3643 | 60.1791 | 3112 | 872 | 3182 | 419 | 327 | 78.0430 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 87.7736 | 89.0780 | 86.5068 | 60.4550 | 1256 | 154 | 2526 | 394 | 302 | 76.6497 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 79.6963 | 66.2459 | 100.0000 | 93.7500 | 1207 | 615 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.0385 | 86.3032 | 96.3235 | 58.6123 | 649 | 103 | 655 | 25 | 25 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 96.8912 | 0 | 0 | 3 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 40.0000 | 96.8750 | 0 | 0 | 2 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 66.6667 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 9.0909 | 95.4167 | 0 | 0 | 1 | 10 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.6667 | 94.5455 | 0 | 0 | 1 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 96.1240 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 79.5976 | 80.1449 | 79.0576 | 60.6684 | 8073 | 2000 | 10755 | 2849 | 1405 | 49.3155 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 83.1375 | 89.8020 | 77.3938 | 60.0848 | 3628 | 412 | 8600 | 2512 | 1214 | 48.3280 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 79.1080 | 66.2395 | 98.1818 | 59.6577 | 2533 | 1291 | 162 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 86.0985 | 86.5550 | 85.6468 | 63.2965 | 1912 | 297 | 1993 | 334 | 189 | 56.5868 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 73.2113 | 82.3308 | 65.9106 | 63.8478 | 1752 | 376 | 1947 | 1007 | 294 | 29.1956 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 76.2110 | 93.8346 | 64.1606 | 62.6038 | 624 | 41 | 1502 | 839 | 231 | 27.5328 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 69.6410 | 0.0000 | 0.0000 | 679 | 296 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 81.1561 | 92.0082 | 72.5938 | 67.9226 | 449 | 39 | 445 | 168 | 63 | 37.5000 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.6562 | 98.9840 | 96.3636 | 77.0001 | 3215 | 33 | 3233 | 122 | 9 | 7.3771 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.6977 | 98.9130 | 94.5794 | 80.5719 | 2002 | 22 | 2024 | 116 | 6 | 5.1724 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.3033 | 99.1013 | 99.5062 | 65.8995 | 1213 | 11 | 1209 | 6 | 3 | 50.0000 | |