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Explore HG002 comparison results
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EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
75751-75800 / 86044 show all
egarrison-hhgaINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
59.1529
51.0315
70.3486
60.3619
9409021433604512
84.7682
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
85.8715
81.4199
90.8380
65.8788
5391238138243
52.4390
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
27.1199
15.9420
90.7489
71.4824
1437542062119
90.4762
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
60.4770
91.1661
45.2459
46.8023
25825414501450
89.8204
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
38.3227
27.8708
61.3176
55.5889
233603363229214
93.4498
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
65.1949
54.6559
80.7692
61.1940
1351121894543
95.5556
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
19.2616
10.7547
92.1569
64.7059
574739487
87.5000
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
43.1125
69.4915
31.2500
41.9501
411880176164
93.1818
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
11.8946
6.7961
47.6190
65.8537
14192202220
90.9091
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
17.9104
10.5263
60.0000
67.7419
10851288
100.0000
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
2.2831
1.1628
62.5000
77.7778
185533
100.0000
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
15.3846
12.0000
21.4286
44.0000
3223119
81.8182
eyeh-varpipeINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
21.1538
92.0368
00114122
53.6585
eyeh-varpipeINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
33.3333
95.3488
00242
50.0000
eyeh-varpipeINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
50.0000
94.1667
00774
57.1429
eyeh-varpipeINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
6.2500
88.7324
0023016
53.3333
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
58.3043
52.2088
66.0112
56.8516
20801904224911581030
88.9465
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
84.1308
76.7376
93.1005
65.8125
108232810938121
25.9259
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
24.4790
14.1603
90.2314
68.8301
25815643513831
81.5789
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
60.4796
98.4043
43.6551
42.6260
740128051039978
94.1290
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
41.7793
36.0397
49.6933
42.7847
14162513145814761368
92.6829
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
73.7801
62.4350
90.1639
54.2729
6003615506048
80.0000
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
18.7138
10.4396
90.2235
66.4165
24721193233530
85.7143
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
45.2624
94.5183
29.7558
27.9326
5693358513811290
93.4106
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
33.7995
27.2556
44.4783
55.2641
5801548584729693
95.0617
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
46.1659
40.4511
53.7611
64.5212
269396243209202
96.6507
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
9.8376
5.2308
82.4742
81.6635
51924801716
94.1176
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
41.6309
53.2787
34.1623
32.5088
260228261503475
94.4334
ckim-vqsrINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.2969
92.1490
96.5473
61.2007
2993255302010827
25.0000
ckim-isaacSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
94.1838
92.7372
95.6762
65.3122
18771471903866
6.9767
ckim-isaacSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.1004
91.1765
99.3772
49.3237
1116108111776
85.7143
ckim-isaacINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
66.2956
51.4563
93.1624
81.5748
10610010984
50.0000
ckim-isaacINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
65.3856
51.5789
89.2857
85.3018
49465062
33.3333
ckim-isaacINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
64.6154
48.8372
95.4545
66.4122
42444222
100.0000
ckim-isaacINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
75.0000
60.0000
100.0000
86.1789
15101700
ckim-isaacINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
80.9438
72.3670
91.8269
61.8148
1333509133711966
55.4622
ckim-isaacINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
85.1218
85.4985
84.7484
72.4437
566965399747
48.4536
ckim-isaacSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.2905
92.1704
96.5104
61.7853
4391373442516047
29.3750
ckim-isaacSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
94.1078
92.3077
95.9796
65.5314
278423228171187
5.9322
ckim-isaacSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-isaacSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.5412
91.9336
99.4434
50.8361
1607141160897
77.7778
ckim-vqsrINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.7235
93.8350
95.6289
69.0222
94526219298425390
91.7647
ckim-vqsrINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
95.3979
96.6584
94.1699
79.6348
39051353602223191
85.6502