PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
75501-75550 / 86044 show all
ckim-gatkINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ckim-dragenSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.7487
98.3509
99.1498
68.6809
1491251516132
15.3846
ckim-dragenSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.7905
98.1855
99.4030
70.9117
9741899962
33.3333
ckim-dragenSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-dragenSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
98.6641
98.6641
98.6641
63.0726
517751770
0.0000
ckim-dragenINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.7238
91.2679
98.4516
67.1749
763737631211
91.6667
ckim-dragenINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
97.2845
95.5466
99.0868
80.4290
2361121721
50.0000
ckim-dragenINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.6974
88.3019
99.7951
47.9744
4686248711
100.0000
ckim-dragenINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
92.9134
100.0000
86.7647
77.6316
5905999
100.0000
ckim-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.7342
93.9641
95.5170
68.9673
94656089311437395
90.3890
ckim-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
95.4384
96.9802
93.9449
79.5374
39181223615233194
83.2618
ckim-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.2704
87.7615
99.5173
36.9269
335646835051717
100.0000
ckim-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.5308
99.1852
92.1362
66.1398
2191182191187184
98.3957
ckim-gatkINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ckim-dragenSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.7380
98.1108
99.3732
66.6039
4674904756307
23.3333
ckim-dragenSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.6894
98.0769
99.3097
69.5160
2958583021215
23.8095
ckim-dragenSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-dragenSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
98.8223
98.1693
99.4839
59.8527
171632173592
22.2222
ckim-dragenSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.7329
97.9988
99.4780
65.5490
3183653240175
29.4118
ckim-dragenSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.6398
98.0237
99.2636
68.7768
1984402022153
20.0000
ckim-dragenSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-dragenSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
98.8879
97.9575
99.8361
58.2906
119925121822
100.0000
ckim-gatkINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ckim-dragenINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.0329
91.8045
94.2947
54.2066
36073223603218214
98.1651
ckim-dragenINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
96.3915
97.1904
95.6056
75.0334
934278924138
92.6829
ckim-dragenINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.1933
87.6162
99.5285
30.2073
207329321111010
100.0000
ckim-dragenINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
87.6552
99.6678
78.2269
51.0842
6002600167166
99.4012
ckim-dragenINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
91.6667
00011
100.0000
ckim-dragenINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000
ckim-dragenINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
91.6667
00011
100.0000
ckim-dragenINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ckim-dragenINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.1429
90.3366
98.2840
67.1270
166417816612928
96.5517
ckim-dragenINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
97.3608
96.0725
98.6842
78.4703
6362660087
87.5000
ckim-dragenINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
91.2068
83.8350
100.0000
41.5864
75214578800
ckim-dragenINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.1346
97.5265
92.8571
69.6281
27672732121
100.0000
ckim-dragenINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.3918
92.3695
96.5046
61.7780
36803043672133128
96.2406
ckim-dragenINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
97.4000
96.5248
98.2912
75.1339
13614913232318
78.2609
ckim-dragenINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.4526
86.3337
99.5050
31.4964
1573249160888
100.0000
ckim-dragenINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
93.2099
99.2021
87.9004
61.3834
7466741102102
100.0000
ckim-dragenINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-dragenINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000