PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
74351-74400 / 86044 show all
egarrison-hhgaINDELC1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
74.0741
66.6667
83.3333
97.4684
42511
100.0000
egarrison-hhgaINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
90.9091
100.0000
83.3333
96.5517
30511
100.0000
egarrison-hhgaINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
50.0000
100.0000
11000
egarrison-hhgaINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
01000
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
eyeh-varpipeINDELC6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
0.0000
97.5610
00010
0.0000
eyeh-varpipeINDELC6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
eyeh-varpipeINDELC6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
eyeh-varpipeINDELC6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
92.3077
00010
0.0000
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
0.0000
100.0000
96.8421
00300
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
0.0000
100.0000
96.2264
00200
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
87.5000
00100
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
59.5745
66.6667
53.8462
93.8095
42766
100.0000
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
88.8889
100.0000
80.0000
95.3271
30411
100.0000
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
02000
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
54.5455
100.0000
37.5000
88.8889
10355
100.0000
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
40.0000
25.0000
100.0000
98.3333
13100
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.1429
10100
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
01000
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
02000
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
90.2778
90.9091
89.6552
98.2769
1012633
100.0000
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
93.3333
87.5000
100.0000
98.5889
711500
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.7013
10100
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
86.9565
100.0000
76.9231
97.6059
201033
100.0000
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
86.7925
100.0000
76.6667
97.8198
102375
71.4286
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
0.0000
100.0000
98.4010
001300
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.3636
10200
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
53.3333
97.0472
00875
71.4286
ckim-vqsrSNP*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-vqsrSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-vqsrSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-vqsrSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
dgrover-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
97.5610
100.0000
95.2381
99.3548
2002010
0.0000
dgrover-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4334
1201200
dgrover-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.9388
30300
dgrover-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
90.9091
100.0000
83.3333
99.4225
50510
0.0000
dgrover-gatkINDELC16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000