PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1468 1469 1470 1471 1472 1473 1474 1475 1476 ... 1720 1721 » 73551-73600 / 86044 show all
gduggal-snapplat	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	54.4770	39.2554	88.9798	82.4941	6052	9365	6088	754	644	85.4111
gduggal-snapplat	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	75.2906	65.9666	87.6843	78.0956	20292	10469	23253	3266	1977	60.5328
gduggal-snapplat	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*		0.0000	0.0000	90.9091	0	3	0	2	0	0.0000
gduggal-snapplat	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het		0.0000	0.0000	87.5000	0	3	0	2	0	0.0000
gduggal-snapplat	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	1	0	0	0
gduggal-snapplat	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	1	0	0	0
gduggal-snapplat	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	3561	0	0	0
gduggal-snapplat	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	1355	0	0	0
gduggal-snapplat	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	1294	0	0	0
gduggal-snapplat	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	912	0	0	0
gduggal-snapplat	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	76.9680	69.6854	85.9503	79.9286	44899	19532	52067	8511	3951	46.4223
gduggal-snapplat	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	77.1866	71.6422	83.6612	80.1878	23811	9425	27896	5448	1746	32.0485
gduggal-snapplat	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	59.5098	45.1054	87.4307	85.0479	4193	5103	4257	612	532	86.9281
gduggal-snapplat	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	82.6699	77.1496	89.0409	77.8450	16895	5004	19914	2451	1673	68.2579
gduggal-snapplat	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	52.7266	38.0507	85.8309	70.4516	6106	9941	5785	955	426	44.6073
gduggal-snapplat	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	44.5932	32.0350	73.3458	78.2195	1793	3804	1563	568	142	25.0000
gduggal-snapplat	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	56.3564	39.9149	95.8304	60.8880	2719	4093	2735	119	102	85.7143
gduggal-snapplat	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	57.7611	43.8153	84.7293	69.3664	1594	2044	1487	268	182	67.9104
ghariani-varprowl	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	95.1859	99.0236	91.6345	64.6332	27686	273	27790	2537	281	11.0761
ghariani-varprowl	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	93.7601	98.6107	89.3644	68.0129	17603	248	17687	2105	19	0.9026
ghariani-varprowl	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	6	0	0	0
ghariani-varprowl	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.8165	99.8119	95.8994	55.8743	10083	19	10103	432	262	60.6481
ghariani-varprowl	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	65.9654	55.6526	80.9698	74.3202	8669	6908	8633	2029	1680	82.7994
ghariani-varprowl	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	85.8876	95.4769	78.0488	76.6109	5826	276	5856	1647	1442	87.5531
ghariani-varprowl	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	0.0000	0.9431	0.0000	0.0000	56	5882	0	0	0
ghariani-varprowl	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	83.1025	78.7956	87.9076	66.5360	2787	750	2777	382	238	62.3037
ghariani-varprowl	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	79.5775	77.4363	81.8404	75.0483	49893	14538	49840	11059	10522	95.1442
ghariani-varprowl	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	85.9332	98.8085	76.0265	77.4229	32840	396	32867	10364	9929	95.8028
ghariani-varprowl	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	0.0000	0.6024	0.0000	0.0000	56	9240	0	0	0
ghariani-varprowl	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	85.8608	77.6154	96.0663	66.4017	16997	4902	16973	695	593	85.3237
ghariani-varprowl	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	95.4136	99.0024	92.0759	67.6063	55076	555	55287	4758	565	11.8747
ghariani-varprowl	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	94.0874	98.5460	90.0149	70.2400	34904	515	35077	3891	30	0.7710
ghariani-varprowl	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	13	0	0	0
ghariani-varprowl	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.8360	99.8663	95.8865	61.2690	20172	27	20210	867	535	61.7070
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	47.0936	38.2121	61.3540	79.0423	436	705	435	274	265	96.7153
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	69.3724	82.3394	59.9338	79.2083	359	77	362	242	234	96.6942
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	0.0000	0.8576	0.0000	0.0000	5	578	0	0	0
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	63.8406	59.0164	69.5238	78.0335	72	50	73	32	31	96.8750
ghariani-varprowl	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	46.6247	43.6219	50.0715	62.1939	7000	9047	7003	6983	6898	98.7828
ghariani-varprowl	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	61.3598	97.0699	44.8576	61.9828	5433	164	5465	6718	6663	99.1813
ghariani-varprowl	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	0.0000	0.4257	0.0000	0.0000	29	6783	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	56.5337	42.2760	85.3023	63.5610	1538	2100	1538	265	235	88.6792

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge