PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73401-73450 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 89.0223 | 86.9300 | 91.2178 | 68.3628 | 41962 | 6309 | 53834 | 5183 | 1886 | 36.3882 | |
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 78.2170 | 70.8374 | 87.3129 | 79.9686 | 10921 | 4496 | 3792 | 551 | 400 | 72.5953 | |
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 91.4953 | 90.7025 | 92.3021 | 74.5517 | 27901 | 2860 | 27890 | 2326 | 2006 | 86.2425 | |
| gduggal-snapfb | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.5998 | 97.4834 | 97.7164 | 62.9555 | 54231 | 1400 | 53617 | 1253 | 392 | 31.2849 | |
| gduggal-bwavard | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.0548 | 97.5889 | 96.5265 | 67.4923 | 34565 | 854 | 34181 | 1230 | 375 | 30.4878 | |
| gduggal-bwavard | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.6054 | 97.3613 | 99.8818 | 50.3445 | 19666 | 533 | 19436 | 23 | 17 | 73.9130 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 28.5714 | 66.6667 | 18.1818 | 83.2061 | 2 | 1 | 4 | 18 | 5 | 27.7778 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 34.7826 | 66.6667 | 23.5294 | 77.0270 | 2 | 1 | 4 | 13 | 3 | 23.0769 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 86.9565 | 0 | 0 | 0 | 3 | 1 | 33.3333 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 94.1176 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 70.5882 | 100.0000 | 54.5455 | 96.1938 | 1 | 0 | 6 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 95.3488 | 1 | 0 | 3 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 97.0149 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.1123 | 0.0562 | 100.0000 | 0.0000 | 2 | 3559 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.1475 | 0.0738 | 100.0000 | 0.0000 | 1 | 1354 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0773 | 0.0000 | 0.0000 | 1 | 1293 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 912 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 42.2458 | 32.6120 | 59.9579 | 69.4254 | 1733 | 3581 | 1710 | 1142 | 1085 | 95.0088 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 68.8039 | 91.6288 | 55.0827 | 70.2532 | 1412 | 129 | 1398 | 1140 | 1083 | 95.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.2564 | 0.0000 | 0.0000 | 8 | 3112 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 64.6690 | 47.9326 | 99.3631 | 60.5528 | 313 | 340 | 312 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 48.3943 | 45.1362 | 52.1594 | 60.4503 | 7243 | 8804 | 7210 | 6613 | 6501 | 98.3064 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 61.9084 | 97.6773 | 45.3144 | 61.3396 | 5467 | 130 | 5469 | 6600 | 6491 | 98.3485 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.3230 | 0.0000 | 0.0000 | 22 | 6790 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 64.9017 | 48.2133 | 99.2588 | 53.0137 | 1754 | 1884 | 1741 | 13 | 10 | 76.9231 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 99.0741 | 92.0118 | 0 | 0 | 107 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 73.9336 | 100.0000 | 58.6466 | 95.6607 | 1 | 0 | 78 | 55 | 19 | 34.5455 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 68.2353 | 100.0000 | 51.7857 | 95.9288 | 1 | 0 | 58 | 54 | 18 | 33.3333 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 95.2381 | 93.3121 | 0 | 0 | 20 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 80.9251 | 78.3877 | 83.6323 | 72.4014 | 50506 | 13925 | 50171 | 9819 | 9240 | 94.1033 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 86.2553 | 98.3091 | 76.8345 | 75.3229 | 32674 | 562 | 32511 | 9802 | 9224 | 94.1032 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.3873 | 0.0000 | 0.0000 | 36 | 9260 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 89.6250 | 81.2640 | 99.9038 | 61.4872 | 17796 | 4103 | 17660 | 17 | 16 | 94.1176 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 65.1709 | 54.2531 | 81.5900 | 69.4864 | 8451 | 7126 | 8323 | 1878 | 1704 | 90.7348 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 84.1187 | 95.1327 | 75.3903 | 72.1991 | 5805 | 297 | 5747 | 1876 | 1702 | 90.7249 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.5221 | 0.0000 | 0.0000 | 31 | 5907 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 84.9850 | 73.9327 | 99.9224 | 57.1120 | 2615 | 922 | 2576 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 55.2299 | 52.5133 | 58.2428 | 71.2539 | 1870 | 1691 | 1876 | 1345 | 1229 | 91.3755 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 64.5844 | 94.0959 | 49.1648 | 73.3293 | 1275 | 80 | 1295 | 1339 | 1224 | 91.4115 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.4637 | 0.0000 | 0.0000 | 6 | 1288 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 78.1643 | 64.5833 | 98.9779 | 55.8315 | 589 | 323 | 581 | 6 | 5 | 83.3333 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 43.5803 | 37.0727 | 52.8590 | 78.7470 | 423 | 718 | 416 | 371 | 276 | 74.3935 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 62.0275 | 82.7982 | 49.5879 | 79.0744 | 361 | 75 | 361 | 367 | 274 | 74.6594 | |