PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73351-73400 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.2904 | 99.2602 | 97.3394 | 75.4562 | 21737 | 162 | 21732 | 594 | 582 | 97.9798 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.2991 | 99.0593 | 97.5505 | 61.1472 | 27696 | 263 | 27758 | 697 | 164 | 23.5294 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.8088 | 99.1429 | 96.5101 | 64.4371 | 17698 | 153 | 17754 | 642 | 126 | 19.6262 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 100.0000 | 85.7143 | 88.3333 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1862 | 98.9111 | 99.4628 | 53.1375 | 9992 | 110 | 9998 | 54 | 37 | 68.5185 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.8735 | 99.4653 | 98.2886 | 67.7942 | 27530 | 148 | 27568 | 480 | 97 | 20.2083 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.4793 | 99.5219 | 97.4583 | 69.5878 | 17484 | 84 | 17523 | 457 | 79 | 17.2867 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 85.5670 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5732 | 99.3661 | 99.7812 | 63.9280 | 10033 | 64 | 10032 | 22 | 17 | 77.2727 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.5779 | 93.7628 | 97.4647 | 70.7003 | 88558 | 5891 | 94531 | 2459 | 2226 | 90.5246 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.1730 | 94.0088 | 98.4392 | 67.8764 | 45379 | 2892 | 60357 | 957 | 752 | 78.5789 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.6109 | 85.8533 | 95.9267 | 79.8715 | 13236 | 2181 | 4239 | 180 | 178 | 98.8889 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.5493 | 97.3408 | 95.7705 | 73.5567 | 29943 | 818 | 29935 | 1322 | 1296 | 98.0333 | |
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.8170 | 99.3884 | 96.2946 | 56.5927 | 27788 | 171 | 27079 | 1042 | 134 | 12.8599 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.1889 | 99.5294 | 94.9560 | 60.6805 | 17767 | 84 | 17150 | 911 | 86 | 9.4402 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 99.0228 | 100.0000 | 98.0645 | 81.3926 | 6 | 0 | 152 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.9228 | 99.1388 | 98.7077 | 45.0241 | 10015 | 87 | 9777 | 128 | 46 | 35.9375 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.1234 | 99.6134 | 96.6774 | 60.9972 | 27571 | 107 | 26129 | 898 | 85 | 9.4655 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.3719 | 99.6869 | 95.1620 | 62.9872 | 17513 | 55 | 16385 | 833 | 63 | 7.5630 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 99.7015 | 100.0000 | 99.4048 | 74.4681 | 13 | 0 | 334 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4099 | 99.4850 | 99.3350 | 55.8574 | 10045 | 52 | 9410 | 63 | 21 | 33.3333 | |
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 50.0000 | 100.0000 | 33.3333 | 99.1549 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.8889 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 99.2424 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 86.1916 | 81.4378 | 91.5347 | 58.1069 | 2900 | 661 | 3006 | 278 | 275 | 98.9209 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 84.8799 | 77.9336 | 93.1858 | 52.6802 | 1056 | 299 | 2147 | 157 | 154 | 98.0892 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.6233 | 84.1577 | 98.1651 | 57.4219 | 1089 | 205 | 107 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 84.5240 | 82.7851 | 86.3375 | 67.9071 | 755 | 157 | 752 | 119 | 119 | 100.0000 | |
| gduggal-bwafb | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 80.0000 | 66.6667 | 100.0000 | 98.5915 | 2 | 1 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 80.0000 | 66.6667 | 100.0000 | 97.2973 | 2 | 1 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9963 | 99.5003 | 96.5372 | 58.7333 | 55353 | 278 | 52773 | 1893 | 213 | 11.2520 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.3253 | 99.6076 | 95.1454 | 61.7302 | 35280 | 139 | 33318 | 1700 | 145 | 8.5294 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 99.6508 | 100.0000 | 99.3039 | 77.5052 | 13 | 0 | 428 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1613 | 99.3118 | 99.0113 | 50.7900 | 20060 | 139 | 19027 | 190 | 66 | 34.7368 | |
| gduggal-bwavard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.4880 | 97.6215 | 97.3548 | 60.2420 | 27294 | 665 | 27125 | 737 | 204 | 27.6798 | |
| gduggal-bwavard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.8048 | 97.6528 | 95.9714 | 65.8504 | 17432 | 419 | 17319 | 727 | 195 | 26.8226 | |
| gduggal-bwavard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 6 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.7481 | 97.6242 | 99.8981 | 43.0461 | 9862 | 240 | 9806 | 10 | 9 | 90.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.6687 | 97.3228 | 98.0171 | 65.4411 | 26937 | 741 | 26644 | 539 | 197 | 36.5492 | |
| gduggal-bwavard | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.2565 | 97.5239 | 96.9905 | 69.1218 | 17133 | 435 | 16952 | 526 | 189 | 35.9316 | |
| gduggal-bwavard | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.4626 | 97.0981 | 99.8660 | 55.9944 | 9804 | 293 | 9692 | 13 | 8 | 61.5385 | |
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 88.3624 | 85.5319 | 91.3867 | 71.3799 | 80784 | 13665 | 85516 | 8060 | 4292 | 53.2506 | |