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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1461 1462 1463 1464 1465 1466 1467 1468 1469 ... 1720 1721 » 73201-73250 / 86044 show all
ckim-dragen	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8358	99.8591	99.8124	64.8592	27639	39	27673	52	16	30.7692
ckim-dragen	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.7926	99.8634	99.7220	66.5121	17544	24	17576	49	13	26.5306
ckim-dragen	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.0000	92.3077	100.0000	82.6087	12	1	12	0	0
ckim-dragen	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9158	99.8613	99.9703	61.4918	10083	14	10085	3	3	100.0000
ckim-dragen	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8169	99.8526	99.7812	60.4097	55549	82	55631	122	39	31.9672
ckim-dragen	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.7746	99.8617	99.6878	62.5042	35370	49	35441	111	28	25.2252
ckim-dragen	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.0000	92.3077	100.0000	82.6087	12	1	12	0	0
ckim-dragen	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8935	99.8416	99.9455	56.0535	20167	32	20178	11	11	100.0000
ckim-dragen	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.7964	99.8426	99.7503	54.7629	27915	44	27963	70	23	32.8571
ckim-dragen	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.7569	99.8600	99.6542	57.5039	17826	25	17865	62	15	24.1935
ckim-dragen	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	90.9091	83.3333	100.0000	87.8049	5	1	5	0	0
ckim-dragen	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8713	99.8218	99.9208	48.8376	10084	18	10093	8	8	100.0000
ckim-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.9696	98.6829	99.2581	73.7654	93205	1244	93112	696	583	83.7644
ckim-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4089	99.5877	99.2308	76.0442	48072	199	47859	371	265	71.4286
ckim-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.4056	93.3839	99.6294	58.1642	14397	1020	14517	54	54	100.0000
ckim-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5208	99.9187	99.1260	74.4622	30736	25	30736	271	264	97.4170
ckim-gatk	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	0.0000	66.6667	0.0000	0.0000	2	1	0	0	0
ckim-gatk	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	0.0000	66.6667	0.0000	0.0000	2	1	0	0	0
ckim-gatk	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
ckim-gatk	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
ckim-gatk	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.9137	96.7068	99.1511	64.1489	5139	175	5139	44	40	90.9091
ckim-dragen	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0173	98.5075	99.5324	77.0540	1518	23	1490	7	3	42.8571
ckim-dragen	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.4894	95.1923	99.9000	43.6220	2970	150	2998	3	3	100.0000
ckim-dragen	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.3094	99.6937	95.0365	73.7548	651	2	651	34	34	100.0000
gduggal-snapfb	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	89.1402	99.2630	80.8911	72.6164	27474	204	27579	6515	214	3.2847
gduggal-snapfb	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	85.6403	99.1633	75.3631	71.5296	17421	147	17540	5734	127	2.2149
gduggal-snapfb	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	14.6893	100.0000	7.9268	78.0161	13	0	13	151	3	1.9868
gduggal-snapfb	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	96.6878	99.4355	94.0878	74.6352	10040	57	10026	630	84	13.3333
gduggal-snapfb	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	0.0000	0.0876	0.0000	0.0000	1	1140	0	0	0
gduggal-snapfb	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	0.0000	0.2294	0.0000	0.0000	1	435	0	0	0
gduggal-snapfb	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	583	0	0	0
gduggal-snapfb	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	122	0	0	0
gduggal-snapfb	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	83.6015	87.3211	80.1860	72.6837	13602	1975	12246	3026	728	24.0582
gduggal-snapfb	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	81.4700	91.7896	73.2362	71.7064	5601	501	6436	2352	386	16.4116
gduggal-snapfb	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	84.8725	80.8690	89.2931	75.5803	4802	1136	2602	312	198	63.4615
gduggal-snapfb	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	90.1510	90.4439	89.8599	72.3577	3199	338	3208	362	144	39.7790
gduggal-snapfb	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	80.3731	72.7114	89.8397	50.0523	11668	4379	12441	1407	1388	98.6496
gduggal-snapfb	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	78.4631	67.4647	93.7460	41.7311	3776	1821	8829	589	574	97.4533
gduggal-snapfb	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	79.1493	72.0787	87.7579	53.3974	4910	1902	638	89	89	100.0000
gduggal-snapfb	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	81.1322	81.9681	80.3133	62.9774	2982	656	2974	729	725	99.4513
gduggal-snapfb	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	88.4732	99.0329	79.9484	69.7226	55093	538	55477	13914	538	3.8666
gduggal-snapfb	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	84.6436	98.9102	73.9737	69.3624	35033	386	35409	12458	341	2.7372

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