PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73001-73050 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 94.3185 | 92.1152 | 96.6299 | 62.4649 | 4895 | 419 | 4903 | 171 | 122 | 71.3450 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.5098 | 93.8352 | 95.1942 | 74.3325 | 1446 | 95 | 1446 | 73 | 39 | 53.4247 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 94.5857 | 90.9615 | 98.5106 | 44.8835 | 2838 | 282 | 2844 | 43 | 39 | 90.6977 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.6585 | 93.5681 | 91.7665 | 71.7189 | 611 | 42 | 613 | 55 | 44 | 80.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 93.9899 | 93.5543 | 94.4295 | 71.2140 | 60278 | 4153 | 60365 | 3561 | 3233 | 90.7891 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.8642 | 98.5648 | 91.4314 | 69.9321 | 32759 | 477 | 33260 | 3117 | 2975 | 95.4443 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 77.7135 | 64.0275 | 98.8407 | 72.1806 | 5952 | 3344 | 5542 | 65 | 54 | 83.0769 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.3782 | 98.4839 | 98.2727 | 72.8894 | 21567 | 332 | 21563 | 379 | 204 | 53.8259 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.4540 | 96.3472 | 98.5866 | 68.3439 | 15008 | 569 | 14997 | 215 | 126 | 58.6047 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.6340 | 97.1321 | 98.1411 | 72.4105 | 5927 | 175 | 5913 | 112 | 49 | 43.7500 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1729 | 95.2004 | 99.2289 | 61.5550 | 5653 | 285 | 5662 | 44 | 38 | 86.3636 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.6068 | 96.9183 | 98.3051 | 69.3951 | 3428 | 109 | 3422 | 59 | 39 | 66.1017 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.5410 | 96.4067 | 98.7024 | 79.1406 | 1100 | 41 | 1217 | 16 | 12 | 75.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.5000 | 95.8716 | 99.1848 | 78.2549 | 418 | 18 | 1095 | 9 | 5 | 55.5556 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 96.0549 | 0.0000 | 0.0000 | 560 | 23 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.2112 | 100.0000 | 94.5736 | 84.5324 | 122 | 0 | 122 | 7 | 7 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1034 | 98.6295 | 99.5819 | 70.6519 | 63548 | 883 | 64304 | 270 | 244 | 90.3704 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1729 | 98.6761 | 99.6748 | 69.3950 | 32796 | 440 | 42603 | 139 | 118 | 84.8921 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.7078 | 0.0000 | 0.0000 | 8897 | 399 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5991 | 99.7991 | 99.4000 | 72.8360 | 21855 | 44 | 21701 | 131 | 126 | 96.1832 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.0126 | 97.4325 | 98.5996 | 53.5616 | 15635 | 412 | 16687 | 237 | 217 | 91.5612 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.3820 | 97.9096 | 98.8590 | 53.4408 | 5480 | 117 | 13083 | 151 | 132 | 87.4172 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.8456 | 0.0000 | 0.0000 | 6529 | 283 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.6596 | 99.6701 | 97.6694 | 53.9900 | 3626 | 12 | 3604 | 86 | 85 | 98.8372 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9217 | 96.6692 | 99.2071 | 63.7791 | 5137 | 177 | 5380 | 43 | 37 | 86.0465 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.5026 | 97.4692 | 99.5582 | 62.4506 | 1502 | 39 | 4732 | 21 | 16 | 76.1905 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.6410 | 0.0000 | 0.0000 | 2984 | 136 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.1825 | 99.6937 | 96.7164 | 71.0458 | 651 | 2 | 648 | 22 | 21 | 95.4545 | |
| cchapple-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4715 | 99.6836 | 99.2603 | 56.9862 | 55455 | 176 | 55556 | 414 | 57 | 13.7681 | |
| cchapple-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2564 | 99.6414 | 98.8744 | 60.9154 | 35292 | 127 | 35487 | 404 | 50 | 12.3762 | |
| cchapple-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 92.3077 | 0.0000 | 0.0000 | 12 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8562 | 99.7624 | 99.9502 | 47.5635 | 20151 | 48 | 20069 | 10 | 7 | 70.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.3332 | 97.2524 | 99.4383 | 69.4992 | 15149 | 428 | 15226 | 86 | 78 | 90.6977 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.7070 | 97.8532 | 99.5759 | 69.9799 | 5971 | 131 | 11741 | 50 | 42 | 84.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.5035 | 0.0000 | 0.0000 | 5671 | 267 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.0646 | 99.1518 | 98.9776 | 67.7712 | 3507 | 30 | 3485 | 36 | 36 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.8519 | 95.9843 | 97.7354 | 64.7626 | 3418 | 143 | 3539 | 82 | 70 | 85.3659 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.6415 | 96.0148 | 97.2764 | 66.3029 | 1301 | 54 | 2643 | 74 | 62 | 83.7838 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 93.9722 | 0.0000 | 0.0000 | 1216 | 78 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.9542 | 98.7939 | 99.1150 | 59.1505 | 901 | 11 | 896 | 8 | 8 | 100.0000 | |
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.6177 | 99.6495 | 99.5860 | 52.1198 | 27861 | 98 | 27903 | 116 | 33 | 28.4483 | |
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4978 | 99.5967 | 99.3992 | 57.0007 | 17779 | 72 | 17867 | 108 | 27 | 25.0000 | |
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 83.3333 | 0.0000 | 0.0000 | 5 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8364 | 99.7525 | 99.9204 | 39.9139 | 10077 | 25 | 10036 | 8 | 6 | 75.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 25.1673 | 16.3154 | 55.0168 | 69.5072 | 867 | 4447 | 817 | 668 | 604 | 90.4192 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 44.5054 | 31.6677 | 74.8476 | 75.2826 | 488 | 1053 | 491 | 165 | 135 | 81.8182 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 1.6026 | 0.0000 | 0.0000 | 50 | 3070 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 44.1721 | 50.3828 | 39.3245 | 62.5903 | 329 | 324 | 326 | 503 | 469 | 93.2406 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 65.6393 | 56.0506 | 79.1857 | 70.3212 | 8731 | 6846 | 8480 | 2229 | 1542 | 69.1790 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 85.1821 | 88.1350 | 82.4206 | 72.9298 | 5378 | 724 | 5448 | 1162 | 656 | 56.4544 | |