PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7251-7300 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.3784 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | * | 97.1292 | 97.3684 | 96.8912 | 95.0078 | 111 | 3 | 187 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | het | 96.7603 | 96.9697 | 96.5517 | 94.4391 | 64 | 2 | 112 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2121 | 2 | 0 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.5232 | 97.8261 | 97.2222 | 95.6311 | 45 | 1 | 70 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e1 | * | 97.0374 | 97.8378 | 96.2500 | 95.1120 | 181 | 4 | 231 | 9 | 4 | 44.4444 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e1 | het | 97.1098 | 98.3607 | 95.8904 | 94.8006 | 120 | 2 | 140 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.9362 | 2 | 1 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.5297 | 98.3333 | 96.7391 | 95.1933 | 59 | 1 | 89 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | * | 50.0000 | 100.0000 | 33.3333 | 98.9474 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.5507 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 99.3056 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| dgrover-gatk | SNP | * | map_l250_m2_e1 | * | 98.4461 | 98.3598 | 98.5325 | 90.3561 | 7856 | 131 | 7856 | 117 | 30 | 25.6410 | |
| dgrover-gatk | SNP | * | map_l250_m2_e1 | het | 98.1329 | 98.3473 | 97.9194 | 91.5436 | 5177 | 87 | 5177 | 110 | 25 | 22.7273 | |
| dgrover-gatk | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l250_m2_e1 | homalt | 99.0554 | 98.3812 | 99.7389 | 86.6637 | 2674 | 44 | 2674 | 7 | 5 | 71.4286 | |
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 97.6744 | 95.4545 | 100.0000 | 97.0833 | 21 | 1 | 21 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 97.2000 | 14 | 0 | 14 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9231 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.7742 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 97.9769 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 97.7578 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0769 | 2 | 1 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 97.8495 | 98.3784 | 97.3262 | 96.0887 | 182 | 3 | 182 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 97.5806 | 99.1803 | 96.0317 | 96.3415 | 121 | 1 | 121 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e1 | homalt | 98.3051 | 96.6667 | 100.0000 | 95.1014 | 58 | 2 | 58 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l250_m2_e1 | * | 98.6193 | 98.5028 | 98.7362 | 90.4249 | 5000 | 76 | 5000 | 64 | 18 | 28.1250 | |
| dgrover-gatk | SNP | ti | map_l250_m2_e1 | het | 98.3512 | 98.5450 | 98.1582 | 91.6782 | 3251 | 48 | 3251 | 61 | 16 | 26.2295 | |
| dgrover-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 82.1429 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l250_m2_e1 | homalt | 99.1191 | 98.4199 | 99.8283 | 86.6233 | 1744 | 28 | 1744 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 96.0000 | 94.7368 | 97.2973 | 96.7401 | 108 | 6 | 108 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 95.3125 | 92.4242 | 98.3871 | 97.3195 | 61 | 5 | 61 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.4733 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.1093 | 45 | 1 | 45 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 95.8175 | 22 | 0 | 22 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 96.0114 | 14 | 0 | 14 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8718 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 97.5709 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 97.2028 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.4684 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e1 | * | 98.1233 | 98.9189 | 97.3404 | 94.5285 | 183 | 2 | 183 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e1 | het | 97.5806 | 99.1803 | 96.0317 | 94.7522 | 121 | 1 | 121 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 99.1597 | 98.3333 | 100.0000 | 93.4004 | 59 | 1 | 59 | 0 | 0 | ||