PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7201-7250 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e1 | * | 40.0000 | 25.0000 | 100.0000 | 99.0431 | 2 | 6 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e1 | het | 33.3333 | 20.0000 | 100.0000 | 99.3631 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.1538 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l250_m2_e1 | * | 60.3106 | 43.2785 | 99.4484 | 91.3314 | 1262 | 1654 | 1262 | 7 | 1 | 14.2857 | |
| ckim-isaac | SNP | tv | map_l250_m2_e1 | het | 63.5294 | 46.7176 | 99.2432 | 92.2217 | 918 | 1047 | 918 | 7 | 1 | 14.2857 | |
| ckim-isaac | SNP | tv | map_l250_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 93.7500 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l250_m2_e1 | homalt | 53.1056 | 36.1522 | 100.0000 | 87.3614 | 342 | 604 | 342 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e1 | * | 74.7253 | 59.6491 | 100.0000 | 97.1536 | 68 | 46 | 68 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e1 | het | 80.0000 | 66.6667 | 100.0000 | 97.6866 | 44 | 22 | 44 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 94.0568 | 23 | 23 | 23 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l250_m2_e1 | * | 66.8585 | 50.3546 | 99.4553 | 90.8557 | 2556 | 2520 | 2556 | 14 | 3 | 21.4286 | |
| ckim-isaac | SNP | ti | map_l250_m2_e1 | het | 69.1304 | 53.0161 | 99.3186 | 92.2279 | 1749 | 1550 | 1749 | 12 | 1 | 8.3333 | |
| ckim-isaac | SNP | ti | map_l250_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 90.4762 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l250_m2_e1 | homalt | 62.4273 | 45.4289 | 99.7522 | 85.0970 | 805 | 967 | 805 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | * | map_l250_m2_e1 | * | 93.4911 | 94.8949 | 92.1283 | 97.4798 | 316 | 17 | 316 | 27 | 2 | 7.4074 | |
| ckim-vqsr | INDEL | * | map_l250_m2_e1 | het | 91.0345 | 93.8389 | 88.3929 | 97.8943 | 198 | 13 | 198 | 26 | 1 | 3.8462 | |
| ckim-vqsr | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4791 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l250_m2_e1 | homalt | 98.7013 | 98.2759 | 99.1304 | 95.7549 | 114 | 2 | 114 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | map_l250_m2_e1 | * | 64.5467 | 47.7776 | 99.4527 | 91.0189 | 3816 | 4171 | 3816 | 21 | 4 | 19.0476 | |
| ckim-isaac | SNP | * | map_l250_m2_e1 | het | 67.0943 | 50.6649 | 99.2926 | 92.2258 | 2667 | 2597 | 2667 | 19 | 2 | 10.5263 | |
| ckim-isaac | SNP | * | map_l250_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 93.7500 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l250_m2_e1 | homalt | 59.3225 | 42.2001 | 99.8259 | 85.8515 | 1147 | 1571 | 1147 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e1 | * | 80.0000 | 80.0000 | 80.0000 | 94.6809 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 3 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.1220 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C6_15 | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C6_15 | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C6_15 | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e1 | * | 89.3697 | 86.3636 | 92.5926 | 95.4082 | 19 | 3 | 25 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e1 | het | 96.7742 | 100.0000 | 93.7500 | 94.4828 | 14 | 0 | 15 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 2 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e1 | homalt | 86.0215 | 83.3333 | 88.8889 | 96.4000 | 5 | 1 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 98.4483 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 98.1481 | 0 | 0 | 6 | 0 | 0 | ||