PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
72401-72450 / 86044 show all
ltrigg-rtg1SNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5600
99.5848
99.5352
55.2358
554002315546325919
7.3359
ltrigg-rtg1SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4242
99.5483
99.3004
56.7770
352591603534324916
6.4257
ltrigg-rtg1SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
77.1930
1211300
ltrigg-rtg1SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8016
99.6534
99.9503
52.1900
201297020107103
30.0000
ltrigg-rtg1INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.3079
97.1210
99.5241
52.9586
15585462154767451
68.9189
ltrigg-rtg1INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.9814
98.5171
99.4501
63.2766
5514835426309
30.0000
ltrigg-rtg1INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1940
95.0822
99.4017
40.6176
647733564803939
100.0000
ltrigg-rtg1INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3225
98.7905
99.8601
50.4916
359444357053
60.0000
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2241
98.9337
99.5161
74.5848
6374468763757310273
88.0645
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5319
99.4945
99.5693
75.4597
3306816833062143107
74.8252
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.0103
94.5783
99.5706
64.1494
879250488113838
100.0000
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6721
99.9315
99.4140
76.0962
218841521884129128
99.2248
jmaeng-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.2295
95.0044
97.4865
79.8699
10845710862818
64.2857
jmaeng-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.6093
96.3303
96.8900
85.7581
42016405135
38.4615
jmaeng-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.1071
92.9674
99.4662
64.2038
5424155932
66.6667
jmaeng-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
95.3125
100.0000
91.0448
86.9776
12201221211
91.6667
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.1341
96.7259
99.5838
73.0521
15067510150756345
71.4286
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3667
99.1478
99.5866
78.9281
6050526022258
32.0000
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0184
92.3880
99.9457
61.4714
5486452552233
100.0000
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4228
99.8304
99.0185
72.8574
3531635313534
97.1429
jmaeng-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.2881
95.5213
99.1216
64.1698
507623850784535
77.7778
jmaeng-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.7219
98.3777
99.0685
77.8155
1516251489146
42.8571
jmaeng-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.4342
93.1731
99.9319
40.7661
2907213293621
50.0000
jmaeng-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.8277
100.0000
95.7478
73.3906
65306532928
96.5517
jmaeng-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.1176
97.7691
98.4687
60.2554
1568935815690244227
93.0328
jmaeng-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.3384
99.0709
97.6165
72.3626
5545525529135121
89.6296
jmaeng-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.4991
95.5520
99.5272
33.1055
650930365263131
100.0000
jmaeng-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.8981
99.9175
97.8993
62.0929
3635336357875
96.1538
jmaeng-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.6504
99.6818
99.6191
61.4842
554541775544321223
10.8491
jmaeng-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5601
99.6979
99.4226
63.8015
353121073530120516
7.8049
jmaeng-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
83.3333
1211200
jmaeng-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8116
99.6584
99.9652
56.5451
20130692013077
100.0000
jmaeng-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.7157
99.7174
99.7139
56.2929
2788079278798010
12.5000
jmaeng-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6389
99.6975
99.5803
59.3397
177975417796755
6.6667
jmaeng-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
88.6364
51500
jmaeng-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8563
99.7624
99.9504
49.5168
10078241007855
100.0000
jmaeng-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5829
99.6423
99.5235
65.6204
27579992756913213
9.8485
jmaeng-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4801
99.6983
99.2628
67.4240
17515531750513011
8.4615
jmaeng-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
83.3333
1211200
jmaeng-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7668
99.5543
99.9801
61.8690
10052451005222
100.0000
ltrigg-rtg2INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9726
98.5812
99.3672
71.8268
15356221155459939
39.3939
ltrigg-rtg2INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.8029
98.7545
98.8513
71.4513
60267660247013
18.5714
ltrigg-rtg2INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.9113
98.1812
99.6524
74.7228
583010860202121
100.0000
ltrigg-rtg2INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3613
98.9539
99.7720
65.8757
350037350185
62.5000
ltrigg-rtg2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4910
99.5737
99.4084
59.3516
275601182755916414
8.5366
ltrigg-rtg2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3248
99.5674
99.0833
60.5130
17492761751016212
7.4074
ltrigg-rtg2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
76.7857
1211300
ltrigg-rtg2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7866
99.5939
99.9801
57.0879
10056411003622
100.0000
ltrigg-rtg2INDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
91.3456
85.6266
97.8831
68.3472
9771649712120
95.2381
ltrigg-rtg2INDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
91.4566
84.8624
99.1620
69.5837
3706635532
66.6667