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Explore HG002 comparison results
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EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
71951-72000 / 86044 show all
ckim-vqsrINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.1910
92.7080
99.9459
61.2682
5505433554333
100.0000
ckim-vqsrINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5070
99.8586
99.1578
72.7530
3532535323030
100.0000
ckim-vqsrINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.5490
95.8600
99.2985
63.8541
509422050963630
83.3333
ckim-vqsrINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.9845
98.4426
99.5324
77.7099
151724149072
28.5714
ckim-vqsrINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.7096
93.7179
99.8985
40.2466
2924196295333
100.0000
ckim-vqsrINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.0480
100.0000
96.1708
73.2150
65306532625
96.1538
ckim-vqsrINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.2919
94.3909
98.2712
79.8126
10776410801917
89.4737
ckim-vqsrINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.4656
94.7248
98.2716
85.9667
4132339875
71.4286
ckim-vqsrINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.2821
93.1389
99.6448
63.2266
5434056122
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
95.6522
99.1803
92.3664
87.2444
12111211010
100.0000
ckim-vqsrINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
0.0000
66.6667
0.0000
0.0000
21000
ckim-vqsrINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
0.0000
66.6667
0.0000
0.0000
21000
ckim-vqsrINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
58.5321
47.8735
75.2959
43.8204
25442770871428592841
99.3704
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
78.4487
74.1077
83.3299
46.2271
11423994044809800
98.8875
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
45.1634
29.5192
96.0848
46.1217
921219923569696
100.0000
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
62.4607
73.6600
54.2174
39.2369
481172231419541945
99.5394
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
70.9466
66.7041
75.7654
53.5142
1070453431086434753422
98.4748
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
90.2411
88.1901
92.3898
58.0809
49366614589378364
96.2963
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
51.7828
35.4521
96.0081
54.3492
241543972862119117
98.3193
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
67.6237
92.1660
53.4032
48.7367
3353285341329782941
98.7576
eyeh-varpipeINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
85.1064
100.0000
74.0741
95.3356
101404936
73.4694
eyeh-varpipeINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
93.6170
100.0000
88.0000
95.8882
104464
66.6667
eyeh-varpipeINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
80.0000
94.8520
00641613
81.2500
eyeh-varpipeINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
54.2373
95.3978
00322719
70.3704
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
91.9743
90.3292
93.6805
71.4710
5820062316021540623944
97.0950
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.1071
97.0183
99.2207
69.5547
3224599132847258171
66.2791
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
61.3581
44.8472
97.1096
76.3054
416951275006149142
95.3020
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
92.2240
99.4840
85.9515
72.5594
217861132236236553631
99.3434
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
83.1973
74.7833
93.7446
68.3849
1164939286175841214009
97.2822
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.7997
94.0020
97.6675
65.5892
573636636639875794
90.7429
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
61.4597
44.8804
97.4636
72.8689
266532734957129121
93.7984
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
89.1434
91.8292
86.6102
71.1229
32482892016231173094
99.2621
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
56.7870
50.7723
64.4183
57.0048
180817531805997979
98.1946
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
69.8290
73.2103
66.7462
59.7115
992363839418413
98.8038
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
38.1941
23.9567
94.1423
64.6972
3109844502828
100.0000
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
51.6769
55.4825
48.3599
47.7729
506406516551538
97.6407
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
33.4409
22.7870
62.8044
47.2074
260881748443442
99.7743
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
37.7753
27.5229
60.2000
50.3476
120316301199199
100.0000
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
21.7822
12.3499
92.2018
54.2977
725112011717
100.0000
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
53.8085
55.7377
52.0085
38.7306
6854246227226
99.5595
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.8280
94.9712
98.7588
48.1636
26553140626734336168
50.0000
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.7656
94.6334
98.9961
51.3619
168939581705917313
7.5145
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
64.2857
51500
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.6487
95.5751
99.8142
40.4145
965544796701811
61.1111
ckim-isaacINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
92.7341
89.2791
96.4674
63.8560
13907167013927510296
58.0392
ckim-isaacINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
93.8020
94.0511
93.5541
72.2618
57393635762397212
53.4005
ckim-isaacINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
91.9653
86.1570
98.6135
44.3408
511682251217260
83.3333
ckim-isaacINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
92.0649
86.2878
98.6710
63.3131
305248530444124
58.5366