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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1435 1436 1437 1438 1439 1440 1441 1442 1443 ... 1720 1721 » 71901-71950 / 86044 show all
dgrover-gatk	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5289	99.3598	99.6985	56.1737	27780	179	27779	84	9	10.7143
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5068	99.4678	99.5459	59.1769	17756	95	17755	81	6	7.4074
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	90.9091	83.3333	100.0000	88.3721	5	1	5	0	0
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5726	99.1784	99.9701	49.4910	10019	83	10019	3	3	100.0000
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3676	99.3641	99.3711	65.4796	27502	176	27492	174	18	10.3448
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2929	99.5560	99.0312	67.2462	17490	78	17480	171	15	8.7719
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.0000	92.3077	100.0000	83.3333	12	1	12	0	0
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5025	99.0393	99.9700	61.7944	10000	97	10000	3	3	100.0000
dgrover-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.2043	99.1106	99.2981	73.8671	93609	840	93517	661	572	86.5356
dgrover-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4181	99.5505	99.2861	75.9770	48054	217	47844	344	262	76.1628
dgrover-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.8320	96.0887	99.6397	60.4528	14814	603	14932	54	53	98.1481
dgrover-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5418	99.9350	99.1517	74.5652	30741	20	30741	263	257	97.7186
dgrover-gatk	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
dgrover-gatk	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
dgrover-gatk	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.3726	98.4555	98.2899	71.9884	3506	55	3506	61	44	72.1311
dgrover-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.0391	99.4096	96.7059	82.8744	1347	8	1233	42	28	66.6667
dgrover-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.9833	96.5224	99.4891	37.1848	1249	45	1363	7	7	100.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2366	99.7807	98.6985	70.3346	910	2	910	12	9	75.0000
dgrover-gatk	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	0.0000	66.6667	0.0000	0.0000	2	1	0	0	0
dgrover-gatk	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	0.0000	66.6667	0.0000	0.0000	2	1	0	0	0
dgrover-gatk	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4494	99.3637	99.5353	61.3550	55277	354	55266	258	27	10.4651
ckim-vqsr	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4006	99.5116	99.2899	63.6333	35246	173	35235	252	21	8.3333
ckim-vqsr	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.0000	92.3077	100.0000	83.3333	12	1	12	0	0
ckim-vqsr	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5376	99.1089	99.9700	56.4901	20019	180	20019	6	6	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.2939	98.0121	98.5773	60.5225	15728	319	15729	227	215	94.7137
ckim-vqsr	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.5688	99.2675	97.8799	72.6755	5556	41	5540	120	110	91.6667
ckim-vqsr	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.7063	95.9630	99.5141	33.0555	6537	275	6554	32	32	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.9385	99.9175	97.9784	62.3961	3635	3	3635	75	73	97.3333
ckim-vqsr	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
ckim-vqsr	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
ckim-vqsr	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.3708	98.3432	98.3984	72.3852	3502	59	3502	57	45	78.9474
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.1537	99.4096	96.9291	83.2983	1347	8	1231	39	30	76.9231
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.8234	96.2133	99.4883	36.4312	1245	49	1361	7	7	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2908	99.7807	98.8056	70.5939	910	2	910	11	8	72.7273
ckim-vqsr	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.2755	98.9912	99.5615	74.4850	63781	650	63794	281	255	90.7473
ckim-vqsr	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5967	99.5697	99.6236	75.3470	33093	143	33087	125	100	80.0000
ckim-vqsr	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.1068	94.7612	99.5714	64.0076	8809	487	8828	38	38	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6856	99.9087	99.4636	76.0319	21879	20	21879	118	117	99.1525
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.2521	96.8864	99.6568	72.9143	15092	485	15100	52	45	86.5385
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4572	99.2298	99.6856	78.8294	6055	47	6025	19	12	63.1579

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