PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7101-7150 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | * | map_l250_m2_e1 | * | 96.0961 | 96.0961 | 96.0961 | 96.5720 | 320 | 13 | 320 | 13 | 3 | 23.0769 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e1 | het | 95.7547 | 96.2085 | 95.3052 | 96.8873 | 203 | 8 | 203 | 10 | 1 | 10.0000 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7011 | 6 | 0 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l250_m2_e1 | homalt | 96.5217 | 95.6897 | 97.3684 | 95.6322 | 111 | 5 | 111 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e1 | * | 93.3333 | 87.5000 | 100.0000 | 97.0588 | 7 | 1 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e1 | het | 88.8889 | 80.0000 | 100.0000 | 97.1831 | 4 | 1 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7746 | 3 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l250_m2_e1 | * | 96.1961 | 96.0961 | 96.2963 | 98.2219 | 320 | 13 | 468 | 18 | 12 | 66.6667 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e1 | het | 96.4506 | 96.6825 | 96.2199 | 94.9010 | 204 | 7 | 280 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 97.8022 | 3 | 3 | 8 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l250_m2_e1 | homalt | 96.8318 | 97.4138 | 96.2567 | 95.5005 | 113 | 3 | 180 | 7 | 7 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e1 | * | 95.1965 | 95.6140 | 94.7826 | 96.4691 | 109 | 5 | 109 | 6 | 1 | 16.6667 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e1 | het | 94.6565 | 93.9394 | 95.3846 | 96.8059 | 62 | 4 | 62 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6842 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e1 | homalt | 95.7447 | 97.8261 | 93.7500 | 95.5140 | 45 | 1 | 45 | 3 | 1 | 33.3333 | |
| egarrison-hhga | SNP | ti | map_l250_m2_e1 | * | 98.8083 | 98.0102 | 99.6195 | 88.7052 | 4975 | 101 | 4975 | 19 | 9 | 47.3684 | |
| egarrison-hhga | SNP | ti | map_l250_m2_e1 | het | 98.4531 | 97.4235 | 99.5046 | 89.2351 | 3214 | 85 | 3214 | 16 | 6 | 37.5000 | |
| egarrison-hhga | SNP | ti | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.6667 | 3 | 2 | 3 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l250_m2_e1 | homalt | 99.5188 | 99.2099 | 99.8296 | 87.5758 | 1758 | 14 | 1758 | 3 | 3 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e1 | * | 98.5286 | 97.5995 | 99.4757 | 87.5868 | 2846 | 70 | 2846 | 15 | 7 | 46.6667 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e1 | het | 98.1200 | 96.9466 | 99.3222 | 87.5276 | 1905 | 60 | 1905 | 13 | 5 | 38.4615 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 95.0820 | 3 | 2 | 3 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l250_m2_e1 | homalt | 99.4698 | 99.1543 | 99.7872 | 87.6462 | 938 | 8 | 938 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 95.6522 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 94.1176 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | * | map_l250_m2_e1 | * | 98.7184 | 97.8841 | 99.5670 | 88.3214 | 7818 | 169 | 7818 | 34 | 16 | 47.0588 | |
| egarrison-hhga | SNP | * | map_l250_m2_e1 | het | 98.3289 | 97.2454 | 99.4367 | 88.6583 | 5119 | 145 | 5119 | 29 | 11 | 37.9310 | |
| egarrison-hhga | SNP | * | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 95.0820 | 3 | 2 | 3 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l250_m2_e1 | homalt | 99.5018 | 99.1906 | 99.8149 | 87.6004 | 2696 | 22 | 2696 | 5 | 5 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m2_e1 | * | 90.9091 | 100.0000 | 83.3333 | 98.5507 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m2_e1 | het | 85.7143 | 100.0000 | 75.0000 | 98.7730 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.5915 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 99.4012 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.9130 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | C6_15 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 97.6293 | 22 | 0 | 22 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 97.9622 | 14 | 0 | 14 | 0 | 0 | ||