PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71251-71300 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 49.7829 | 0.0000 | 0.0000 | 4012 | 4047 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 17.8608 | 9.9044 | 90.8088 | 60.0587 | 373 | 3393 | 247 | 25 | 25 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 32.2896 | 88.3995 | 0 | 0 | 165 | 346 | 61 | 17.6301 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 30.5499 | 87.9361 | 0 | 0 | 150 | 341 | 58 | 17.0088 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 75.0000 | 94.0299 | 0 | 0 | 15 | 5 | 3 | 60.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 4.7580 | 2.6205 | 25.8123 | 79.0152 | 131 | 4868 | 143 | 411 | 255 | 62.0438 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 8.9302 | 5.4426 | 24.8629 | 78.7573 | 99 | 1720 | 136 | 411 | 255 | 62.0438 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 1.3465 | 0.0000 | 0.0000 | 26 | 1905 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.9562 | 0.4804 | 100.0000 | 89.2308 | 6 | 1243 | 7 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 64.3466 | 65.7191 | 63.0303 | 66.4559 | 10565 | 5511 | 13341 | 7825 | 6132 | 78.3642 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 71.3469 | 89.3925 | 59.3632 | 66.7339 | 5739 | 681 | 11355 | 7773 | 6089 | 78.3353 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 50.9584 | 0.0000 | 0.0000 | 3004 | 2891 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 64.7166 | 48.4446 | 97.4485 | 63.6006 | 1822 | 1939 | 1986 | 52 | 43 | 82.6923 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 41.1509 | 37.5633 | 45.4962 | 49.7904 | 2374 | 3946 | 3379 | 4048 | 3339 | 82.4852 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 53.1638 | 65.0431 | 44.9536 | 49.5979 | 1282 | 689 | 3296 | 4036 | 3328 | 82.4579 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 29.3333 | 0.0000 | 0.0000 | 1034 | 2491 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 13.0281 | 7.0388 | 87.3684 | 61.2245 | 58 | 766 | 83 | 12 | 11 | 91.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 1.5317 | 0.7843 | 32.5163 | 68.9024 | 12 | 1518 | 199 | 413 | 192 | 46.4891 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 3.4141 | 1.8018 | 32.4590 | 68.7660 | 12 | 654 | 198 | 412 | 191 | 46.3592 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 659 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 50.0000 | 86.6667 | 0 | 205 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 38.3328 | 100.0000 | 23.7109 | 89.9572 | 1 | 0 | 584 | 1879 | 136 | 7.2379 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 35.5756 | 100.0000 | 21.6364 | 89.6259 | 1 | 0 | 513 | 1858 | 127 | 6.8353 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 77.1739 | 94.4910 | 0 | 0 | 71 | 21 | 9 | 42.8571 | |
| gduggal-snapplat | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 33.3333 | 95.5224 | 0 | 1 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 96.1538 | 0 | 1 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 88.8889 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 59.2431 | 51.8849 | 69.0334 | 76.6255 | 16296 | 15112 | 21147 | 9486 | 4195 | 44.2231 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 57.2793 | 53.5509 | 61.5656 | 80.5733 | 7367 | 6390 | 10114 | 6314 | 1790 | 28.3497 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 54.8241 | 40.1571 | 86.3699 | 66.0570 | 3731 | 5560 | 3783 | 597 | 508 | 85.0921 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 67.4881 | 62.1770 | 73.7913 | 70.7459 | 5198 | 3162 | 7250 | 2575 | 1897 | 73.6699 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 48.8268 | 34.5142 | 83.4201 | 65.6853 | 6099 | 11572 | 5766 | 1146 | 527 | 45.9860 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 41.0970 | 29.3534 | 68.5039 | 74.9565 | 1716 | 4130 | 1479 | 680 | 172 | 25.2941 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 51.1480 | 34.9051 | 95.6654 | 53.7872 | 2813 | 5246 | 2825 | 128 | 108 | 84.3750 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 55.0977 | 41.6888 | 81.2222 | 64.9260 | 1570 | 2196 | 1462 | 338 | 247 | 73.0769 | |
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 4999 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1819 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1931 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1249 | 0 | 0 | 0 | |||