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Explore HG002 comparison results
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EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
71201-71250 / 86044 show all
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
81.8133
75.2350
89.6520
58.5736
376112383942455448
98.4615
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
80.6843
72.0726
91.6333
55.4102
13115082749251244
97.2112
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
86.0000
76.2299
98.6425
50.7795
147245921833
100.0000
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
80.5396
78.3026
82.9082
65.7841
978271975201201
100.0000
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
91.1270
87.3774
95.2128
60.8815
5710282496396332162822
87.7488
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
91.6563
86.8570
97.0171
59.4271
264744006429971322971
73.4493
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
87.8267
81.6103
95.0682
57.7013
1363330723971206202
98.0583
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
92.2413
93.5539
90.9650
64.4972
1699511711699516881649
97.6896
gduggal-bwafbINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
0.0000
100.0000
00000
gduggal-bwafbINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
0.0000
0.0000
0.0000
00000
gduggal-bwafbINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.0000
0.0000
00000
gduggal-bwafbINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
0.0000
100.0000
00000
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
77.3318
82.5652
72.7223
71.1326
1327428031203745151002
22.1927
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
74.4014
87.0872
64.9416
71.9724
559182966133570542
15.1821
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
79.7260
75.6106
84.3152
58.0080
445814382204410248
60.4878
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
85.7504
85.7485
85.7523
74.5958
32255363220535212
39.6262
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
76.0331
67.0590
87.7802
43.4475
1185058211268617661744
98.7542
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
74.4244
62.1108
92.8275
37.1477
363122158943691673
97.3951
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
74.5911
64.9460
87.6005
39.3454
52342825763108107
99.0741
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
77.3354
79.2618
75.5004
55.1018
29857812980967964
99.6898
gduggal-snapfbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
0.0000
0.1307
0.0000
0.0000
21528000
gduggal-snapfbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
0.0000
0.3003
0.0000
0.0000
2664000
gduggal-snapfbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.0000
0.0000
0659000
gduggal-snapfbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
0.0000
0.0000
0.0000
0205000
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
62.0536
50.9807
79.2711
51.4534
322330992436637614
96.3893
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
62.8725
52.4099
78.5542
50.1920
10339381630445427
95.9551
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
63.4640
52.6659
79.8319
50.6633
18571669475120116
96.6667
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
54.1272
40.3636
82.1340
57.9332
3334923317271
98.6111
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
86.7363
86.3984
87.0769
60.8804
2713642722809141691922
46.1022
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
87.6713
88.1806
87.1679
60.5788
121311626177502613591
22.6177
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
83.9960
76.5257
93.0825
45.8976
711021812449182112
61.5385
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
89.5657
94.4378
85.1716
64.2887
7895465789213741219
88.7191
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
79.0227
95.1074
67.5916
78.7307
4346622364399421094684
3.2426
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
72.8692
95.0543
59.0803
78.2168
2729214202778919247483
2.5095
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
13.6364
100.0000
7.3171
82.8308
150151908
4.2105
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
92.9003
95.1929
90.7155
79.9240
16159816161901657193
11.6476
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
81.9557
95.2253
71.9321
77.0498
2965614873004111722436
3.7195
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
76.4238
95.1325
63.8642
77.1773
186269531898310741319
2.9699
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
14.2857
100.0000
7.6923
80.7169
120121447
4.8611
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.1513
95.3774
92.9563
76.6652
1101853411046837110
13.1422
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
73.1099
94.8597
59.4736
81.1920
13822749139659516255
2.6797
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
66.2291
94.8867
50.8665
79.7967
866646788068506164
1.9281
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
13.6364
100.0000
7.3171
82.8308
150151908
4.2105
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
90.3235
94.7999
86.2508
84.2900
5141282514482083
10.1220
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
64.0892
66.0415
62.2490
58.2196
2074110665298491810214698
81.1954
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
72.2778
90.5780
60.1295
57.9997
124591296270331792514535
81.0879
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
60.0151
0.0000
0.0000
55763715000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
48.1662
32.3684
94.0862
61.2657
270656542816177163
92.0904
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
55.1228
49.5784
62.0635
51.0444
87618910897554864728
86.1830
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
67.5308
74.8546
61.5124
50.8317
43761470872854614703
86.1198