PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70801-70850 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 51.5950 | 42.4685 | 65.7179 | 59.2998 | 2123 | 2876 | 2101 | 1096 | 789 | 71.9891 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 56.8293 | 53.5459 | 60.5416 | 56.3805 | 974 | 845 | 1252 | 816 | 596 | 73.0392 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 16.4164 | 0.0000 | 0.0000 | 317 | 1614 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 70.6464 | 66.6133 | 75.1993 | 63.7444 | 832 | 417 | 849 | 280 | 193 | 68.9286 | |
| anovak-vg | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 50.0000 | 88.8889 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 20.4545 | 88.0109 | 0 | 1 | 27 | 105 | 4 | 3.8095 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 15.3226 | 87.4747 | 0 | 1 | 19 | 105 | 4 | 3.8095 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.7928 | 0 | 0 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 88.6878 | 0 | 0 | 0 | 25 | 3 | 12.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 88.1517 | 0 | 0 | 0 | 25 | 3 | 12.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 51.2305 | 44.8305 | 59.7622 | 50.2699 | 7922 | 9749 | 8093 | 5449 | 4223 | 77.5005 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 62.0445 | 67.3110 | 57.5423 | 47.2192 | 3935 | 1911 | 5947 | 4388 | 3469 | 79.0565 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 24.4075 | 0.0000 | 0.0000 | 1967 | 6092 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 59.5457 | 53.6378 | 66.9161 | 58.0784 | 2020 | 1746 | 2146 | 1061 | 754 | 71.0650 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 15.0284 | 9.6078 | 34.4828 | 60.5442 | 147 | 1383 | 140 | 266 | 110 | 41.3534 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 11.7218 | 6.7568 | 44.2029 | 61.9835 | 45 | 621 | 61 | 77 | 10 | 12.9870 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 4.0971 | 0.0000 | 0.0000 | 27 | 632 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 32.6491 | 36.5854 | 29.4776 | 59.7598 | 75 | 130 | 79 | 189 | 100 | 52.9101 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 63.3637 | 60.1216 | 66.9753 | 55.5677 | 18883 | 12525 | 19891 | 9808 | 7269 | 74.1130 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 71.0827 | 79.4287 | 64.3238 | 52.6876 | 10927 | 2830 | 14341 | 7954 | 5860 | 73.6736 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 28.3070 | 0.0000 | 0.0000 | 2630 | 6661 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 68.8773 | 63.7081 | 74.9595 | 62.4506 | 5326 | 3034 | 5550 | 1854 | 1409 | 75.9978 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 58.0405 | 54.1246 | 62.5672 | 55.8642 | 35371 | 29980 | 43558 | 26060 | 19700 | 75.5948 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 62.1592 | 62.6870 | 61.6403 | 53.4558 | 19107 | 11373 | 30086 | 18723 | 13632 | 72.8088 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 25.3457 | 0.0000 | 0.0000 | 4234 | 12471 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 65.4735 | 66.2226 | 64.7412 | 60.6352 | 12030 | 6136 | 13472 | 7337 | 6068 | 82.7041 | |
| bgallagher-sentieon | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1887 | 96.0131 | 98.3936 | 84.9441 | 1469 | 61 | 1470 | 24 | 17 | 70.8333 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.5508 | 96.6967 | 98.4202 | 87.9726 | 644 | 22 | 623 | 10 | 5 | 50.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.8850 | 94.2337 | 99.6899 | 70.3721 | 621 | 38 | 643 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.9121 | 99.5122 | 94.4444 | 91.3008 | 204 | 1 | 204 | 12 | 10 | 83.3333 | |
| bgallagher-sentieon | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.2203 | 97.7012 | 98.7450 | 60.3971 | 30686 | 722 | 30686 | 390 | 372 | 95.3846 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0727 | 99.1931 | 98.9527 | 67.4865 | 13646 | 111 | 13605 | 144 | 128 | 88.8889 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.4715 | 93.5529 | 99.5781 | 31.7934 | 8692 | 599 | 8733 | 37 | 36 | 97.2973 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6936 | 99.8565 | 97.5576 | 63.3125 | 8348 | 12 | 8348 | 209 | 208 | 99.5215 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1535 | 96.7800 | 97.5299 | 57.5288 | 17102 | 569 | 17097 | 433 | 414 | 95.6120 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7706 | 98.9737 | 96.5965 | 71.2228 | 5786 | 60 | 5733 | 202 | 187 | 92.5743 | |