PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70601-70650 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.3085 | 94.9832 | 95.6360 | 75.7457 | 13840 | 731 | 13850 | 632 | 351 | 55.5380 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.9166 | 92.5873 | 97.3660 | 75.0931 | 8456 | 677 | 8465 | 229 | 6 | 2.6201 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.5517 | 93.3333 | 100.0000 | 85.5670 | 14 | 1 | 14 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.9278 | 99.0227 | 93.0204 | 76.6292 | 5370 | 53 | 5371 | 403 | 345 | 85.6079 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 71.1864 | 97.3047 | 0 | 1 | 42 | 17 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 63.0435 | 97.3364 | 0 | 1 | 29 | 17 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.6102 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2705 | 0 | 0 | 11 | 0 | 0 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 10.5263 | 92.2343 | 0 | 0 | 6 | 51 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 10.0000 | 89.5288 | 0 | 0 | 4 | 36 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 11.7647 | 95.0292 | 0 | 0 | 2 | 15 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 91.5884 | 91.6329 | 91.5440 | 60.2311 | 59883 | 5468 | 83381 | 7702 | 4718 | 61.2568 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 92.9598 | 95.4921 | 90.5582 | 61.3692 | 29106 | 1374 | 59456 | 6199 | 3476 | 56.0736 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 88.4879 | 79.8982 | 99.1469 | 44.6823 | 13347 | 3358 | 3254 | 28 | 24 | 85.7143 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.6261 | 95.9485 | 93.3397 | 58.3275 | 17430 | 736 | 20671 | 1475 | 1218 | 82.5763 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 82.7253 | 89.2979 | 77.0540 | 68.9962 | 4464 | 535 | 4755 | 1416 | 413 | 29.1667 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 84.5148 | 96.2617 | 75.3230 | 67.9780 | 1751 | 68 | 3556 | 1165 | 308 | 26.4378 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 78.3532 | 100.0000 | 1513 | 418 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 88.8820 | 96.0769 | 82.6897 | 71.8992 | 1200 | 49 | 1199 | 251 | 105 | 41.8327 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 93.3965 | 91.9097 | 94.9321 | 59.4498 | 28867 | 2541 | 29709 | 1586 | 1202 | 75.7881 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.9721 | 95.9293 | 94.0338 | 60.7675 | 13197 | 560 | 21640 | 1373 | 1000 | 72.8332 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 90.2681 | 82.2624 | 100.0000 | 94.4664 | 7643 | 1648 | 14 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.7152 | 96.0167 | 97.4238 | 54.7331 | 8027 | 333 | 8055 | 213 | 202 | 94.8357 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 61.1111 | 97.7070 | 0 | 0 | 11 | 7 | 1 | 14.2857 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 57.1429 | 97.6705 | 0 | 0 | 8 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 66.6667 | 98.1250 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.8647 | 98.5647 | 99.1665 | 69.0402 | 30696 | 447 | 30695 | 258 | 94 | 36.4341 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5764 | 98.1511 | 99.0054 | 69.1058 | 19217 | 362 | 19211 | 193 | 36 | 18.6528 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 12 | 0 | 12 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.3503 | 99.2642 | 99.4366 | 68.8610 | 11467 | 85 | 11472 | 65 | 58 | 89.2308 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.7167 | 98.4558 | 98.9789 | 74.5335 | 14346 | 225 | 14346 | 148 | 46 | 31.0811 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.3853 | 98.0620 | 98.7107 | 74.2575 | 8956 | 177 | 8958 | 117 | 19 | 16.2393 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.5730 | 15 | 0 | 15 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2704 | 99.1149 | 99.4264 | 74.8452 | 5375 | 48 | 5373 | 31 | 27 | 87.0968 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.6793 | 98.2539 | 97.1113 | 81.2381 | 44904 | 798 | 44812 | 1333 | 148 | 11.1028 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.9374 | 98.0844 | 95.8169 | 84.1185 | 28162 | 550 | 28220 | 1232 | 90 | 7.3052 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0120 | 15 | 0 | 15 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9649 | 98.5390 | 99.3944 | 72.2038 | 16727 | 248 | 16577 | 101 | 58 | 57.4257 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2810 | 98.6274 | 95.9709 | 85.0094 | 14371 | 200 | 14363 | 603 | 45 | 7.4627 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.1549 | 98.4124 | 93.9987 | 87.3444 | 8988 | 145 | 9022 | 576 | 32 | 5.5556 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0120 | 15 | 0 | 15 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2401 | 98.9858 | 99.4956 | 77.2155 | 5368 | 55 | 5326 | 27 | 13 | 48.1481 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 92.6329 | 89.7120 | 95.7505 | 61.0009 | 14423 | 1654 | 21721 | 964 | 836 | 86.7220 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.7862 | 96.4642 | 95.1177 | 63.6639 | 6193 | 227 | 14027 | 720 | 615 | 85.4167 | |