PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7001-7050 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | D16_PLUS | map_siren | hetalt | 94.9153 | 90.3226 | 100.0000 | 82.6590 | 28 | 3 | 30 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_siren | homalt | 91.6667 | 97.0588 | 86.8421 | 94.1267 | 33 | 1 | 33 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_siren | * | 99.2924 | 99.2916 | 99.2932 | 82.3565 | 3504 | 25 | 3512 | 25 | 5 | 20.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_siren | het | 99.2553 | 99.3852 | 99.1259 | 82.2139 | 2263 | 14 | 2268 | 20 | 1 | 5.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_siren | hetalt | 96.3415 | 94.0476 | 98.7500 | 90.6760 | 79 | 5 | 79 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_siren | homalt | 99.5720 | 99.4863 | 99.6578 | 81.5178 | 1162 | 6 | 1165 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_siren | * | 95.4928 | 97.6744 | 93.4066 | 92.6790 | 84 | 2 | 85 | 6 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_siren | het | 93.2039 | 97.9592 | 88.8889 | 91.7808 | 48 | 1 | 48 | 6 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_siren | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.1212 | 16 | 0 | 17 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_siren | homalt | 97.5610 | 95.2381 | 100.0000 | 95.5947 | 20 | 1 | 20 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_siren | * | 88.5873 | 80.5990 | 98.3333 | 78.2801 | 2422 | 583 | 2419 | 41 | 12 | 29.2683 | |
| ckim-isaac | INDEL | I1_5 | map_siren | het | 91.7548 | 86.3772 | 97.8466 | 80.2288 | 1452 | 229 | 1454 | 32 | 7 | 21.8750 | |
| ckim-isaac | INDEL | I1_5 | map_siren | hetalt | 85.4934 | 76.7857 | 96.4286 | 82.2410 | 86 | 26 | 81 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | I1_5 | map_siren | homalt | 84.1104 | 72.9373 | 99.3258 | 73.3293 | 884 | 328 | 884 | 6 | 3 | 50.0000 | |
| ckim-isaac | SNP | ti | map_siren | * | 86.1284 | 75.6983 | 99.8922 | 49.9174 | 75967 | 24388 | 75975 | 82 | 16 | 19.5122 | |
| ckim-isaac | SNP | ti | map_siren | het | 88.1134 | 78.8433 | 99.8538 | 52.2793 | 49184 | 13198 | 49191 | 72 | 6 | 8.3333 | |
| ckim-isaac | SNP | ti | map_siren | hetalt | 70.4545 | 54.3860 | 100.0000 | 72.0721 | 31 | 26 | 31 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_siren | homalt | 82.7288 | 70.5560 | 99.9776 | 44.7961 | 26752 | 11164 | 26753 | 6 | 6 | 100.0000 | |
| ckim-isaac | SNP | tv | map_siren | * | 81.9877 | 69.5646 | 99.8126 | 55.0084 | 31951 | 13979 | 31956 | 60 | 25 | 41.6667 | |
| ckim-isaac | SNP | tv | map_siren | het | 84.7375 | 73.6377 | 99.7775 | 56.9492 | 21067 | 7542 | 21072 | 47 | 12 | 25.5319 | |
| ckim-isaac | SNP | tv | map_siren | hetalt | 72.4409 | 56.7901 | 100.0000 | 72.4551 | 46 | 35 | 46 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_siren | homalt | 77.1855 | 62.8654 | 99.9539 | 50.4637 | 10838 | 6402 | 10838 | 5 | 5 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_siren | * | 97.9969 | 97.3279 | 98.6752 | 85.5636 | 7212 | 198 | 7225 | 97 | 19 | 19.5876 | |
| ckim-vqsr | INDEL | * | map_siren | het | 97.3739 | 96.6060 | 98.1540 | 87.1388 | 4355 | 153 | 4360 | 82 | 11 | 13.4146 | |
| ckim-vqsr | INDEL | * | map_siren | hetalt | 94.4444 | 89.4737 | 100.0000 | 86.4930 | 221 | 26 | 223 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_siren | homalt | 99.3599 | 99.2844 | 99.4355 | 81.7137 | 2636 | 19 | 2642 | 15 | 8 | 53.3333 | |
| ckim-vqsr | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | map_siren | * | 84.8645 | 73.7800 | 99.8686 | 51.5315 | 107887 | 38341 | 107900 | 142 | 41 | 28.8732 | |
| ckim-isaac | SNP | * | map_siren | het | 87.0731 | 77.2065 | 99.8309 | 53.7836 | 70251 | 20740 | 70263 | 119 | 18 | 15.1261 | |
| ckim-isaac | SNP | * | map_siren | hetalt | 72.4409 | 56.7901 | 100.0000 | 72.4551 | 46 | 35 | 46 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_siren | homalt | 81.0505 | 68.1522 | 99.9707 | 46.5592 | 37590 | 17566 | 37591 | 11 | 11 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_siren | * | 8.7912 | 4.6512 | 80.0000 | 97.2376 | 4 | 82 | 4 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_siren | het | 11.3208 | 6.1224 | 75.0000 | 96.9466 | 3 | 46 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_siren | hetalt | 0.0000 | 100.0000 | 0 | 16 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_siren | homalt | 9.0909 | 4.7619 | 100.0000 | 95.8333 | 1 | 20 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_siren | * | 63.4176 | 46.8852 | 97.9592 | 84.2105 | 143 | 162 | 144 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | I6_15 | map_siren | het | 65.4206 | 48.9510 | 98.5915 | 87.8425 | 70 | 73 | 70 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_siren | hetalt | 68.4843 | 52.7778 | 97.5000 | 75.4601 | 38 | 34 | 39 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | map_siren | homalt | 55.5556 | 38.8889 | 97.2222 | 80.4348 | 35 | 55 | 35 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | ti | map_siren | * | 86.3605 | 76.1935 | 99.6585 | 68.7036 | 76464 | 23891 | 76451 | 262 | 25 | 9.5420 | |
| ckim-vqsr | SNP | ti | map_siren | het | 91.0834 | 83.9713 | 99.5117 | 71.3937 | 52383 | 9999 | 52376 | 257 | 20 | 7.7821 | |
| ckim-vqsr | SNP | ti | map_siren | hetalt | 69.6629 | 54.3860 | 96.8750 | 86.4407 | 31 | 26 | 31 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | ti | map_siren | homalt | 77.6182 | 63.4297 | 99.9834 | 60.5065 | 24050 | 13866 | 24044 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||