PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70401-70450 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.7424 | 96.3145 | 99.2132 | 57.7581 | 6089 | 233 | 6053 | 48 | 28 | 58.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.2208 | 95.9411 | 98.5350 | 66.0589 | 1891 | 80 | 1816 | 27 | 9 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.9550 | 96.3415 | 99.6234 | 50.0434 | 3397 | 129 | 3439 | 13 | 12 | 92.3077 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.0398 | 97.0909 | 99.0074 | 61.6738 | 801 | 24 | 798 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.3394 | 98.7572 | 97.9251 | 69.6626 | 45134 | 568 | 45544 | 965 | 45 | 4.6632 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.6510 | 98.5407 | 96.7772 | 70.9827 | 28293 | 419 | 28618 | 953 | 37 | 3.8825 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.7500 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5299 | 99.1222 | 99.9409 | 66.9776 | 16826 | 149 | 16910 | 10 | 6 | 60.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.4525 | 98.8280 | 98.0798 | 67.6014 | 30778 | 365 | 31005 | 607 | 33 | 5.4366 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.8464 | 98.6772 | 97.0296 | 69.0281 | 19320 | 259 | 19501 | 597 | 25 | 4.1876 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 92.8571 | 100.0000 | 86.6667 | 86.3636 | 12 | 0 | 13 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5046 | 99.0824 | 99.9304 | 64.6956 | 11446 | 106 | 11491 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1473 | 97.6302 | 98.6700 | 64.9578 | 15696 | 381 | 15802 | 213 | 56 | 26.2911 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4167 | 97.7259 | 97.1096 | 71.4786 | 6274 | 146 | 6249 | 186 | 32 | 17.2043 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 98.5556 | 97.4729 | 99.6627 | 53.9495 | 5747 | 149 | 5909 | 20 | 20 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.7497 | 97.7134 | 99.8083 | 64.4325 | 3675 | 86 | 3644 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.9234 | 93.0786 | 98.9476 | 63.4393 | 4653 | 346 | 4607 | 49 | 36 | 73.4694 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.1044 | 93.8977 | 98.4174 | 74.4802 | 1708 | 111 | 1679 | 27 | 14 | 51.8519 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.7294 | 90.7820 | 99.0357 | 41.6612 | 1753 | 178 | 1746 | 17 | 17 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.4636 | 95.4363 | 99.5788 | 60.7992 | 1192 | 57 | 1182 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.0639 | 76.7320 | 97.9798 | 69.7941 | 1174 | 356 | 1164 | 24 | 19 | 79.1667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 85.6972 | 75.6757 | 98.7780 | 69.6726 | 504 | 162 | 485 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.8187 | 77.3900 | 98.8636 | 65.8694 | 510 | 149 | 522 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 84.8290 | 78.0488 | 92.8994 | 77.9661 | 160 | 45 | 157 | 12 | 12 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8670 | 96.7220 | 99.0393 | 65.6223 | 15550 | 527 | 15670 | 152 | 41 | 26.9737 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4365 | 96.8847 | 97.9946 | 71.7201 | 6220 | 200 | 6206 | 127 | 19 | 14.9606 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.6588 | 95.6920 | 99.7081 | 53.9605 | 5642 | 254 | 5807 | 17 | 17 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9129 | 98.0590 | 99.7817 | 66.6211 | 3688 | 73 | 3657 | 8 | 5 | 62.5000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.0384 | 94.9067 | 99.2681 | 58.6918 | 6000 | 322 | 5968 | 44 | 25 | 56.8182 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.1952 | 95.9411 | 98.4824 | 66.8225 | 1891 | 80 | 1817 | 28 | 10 | 35.7143 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6531 | 93.7323 | 99.7618 | 50.5158 | 3305 | 221 | 3350 | 8 | 7 | 87.5000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.2267 | 97.4545 | 99.0111 | 63.3439 | 804 | 21 | 801 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.4371 | 99.0591 | 97.8229 | 71.0281 | 45272 | 430 | 45697 | 1017 | 32 | 3.1465 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7774 | 98.9308 | 96.6505 | 72.2034 | 28405 | 307 | 28740 | 996 | 22 | 2.2088 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5807 | 99.2754 | 99.8880 | 68.6524 | 16852 | 123 | 16941 | 19 | 8 | 42.1053 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.5520 | 95.8237 | 99.3437 | 50.3216 | 16933 | 738 | 16803 | 111 | 74 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5300 | 97.9644 | 99.1021 | 62.8102 | 5727 | 119 | 5629 | 51 | 17 | 33.3333 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.1173 | 93.0761 | 99.3641 | 35.8818 | 7501 | 558 | 7500 | 48 | 48 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0231 | 98.3802 | 99.6744 | 47.3579 | 3705 | 61 | 3674 | 12 | 9 | 75.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 95.9064 | 95.2710 | 0 | 0 | 164 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 94.8718 | 94.2605 | 0 | 0 | 74 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 95.8904 | 95.3115 | 0 | 0 | 70 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.1429 | 0 | 0 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.5832 | 95.9437 | 99.2798 | 56.3557 | 30134 | 1274 | 30188 | 219 | 93 | 42.4658 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.1389 | 95.5295 | 98.8034 | 63.4805 | 13142 | 615 | 13129 | 159 | 34 | 21.3836 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6948 | 94.0803 | 99.4587 | 42.1375 | 8741 | 550 | 8820 | 48 | 47 | 97.9167 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2720 | 98.6962 | 99.8546 | 54.0539 | 8251 | 109 | 8239 | 12 | 12 | 100.0000 | |
| jpowers-varprowl | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||