PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70201-70250 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.1323 | 91.9608 | 98.5304 | 80.4728 | 1407 | 123 | 1408 | 21 | 9 | 42.8571 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 93.4337 | 89.0390 | 98.2847 | 83.6374 | 593 | 73 | 573 | 10 | 2 | 20.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.5621 | 93.6267 | 99.6875 | 66.3512 | 617 | 42 | 638 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.8637 | 96.0976 | 95.6311 | 88.8829 | 197 | 8 | 197 | 9 | 5 | 55.5556 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1965 | 97.0144 | 99.4078 | 64.7466 | 15597 | 480 | 15611 | 93 | 72 | 77.4194 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5394 | 97.9595 | 99.1262 | 72.9162 | 6289 | 131 | 6239 | 55 | 36 | 65.4545 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.1401 | 94.4708 | 99.9645 | 35.6743 | 5570 | 326 | 5631 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2174 | 99.3885 | 99.0469 | 69.9044 | 3738 | 23 | 3741 | 36 | 34 | 94.4444 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.4217 | 95.9190 | 98.9723 | 59.1578 | 6064 | 258 | 6067 | 63 | 48 | 76.1905 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4424 | 96.0934 | 98.8298 | 71.9151 | 1894 | 77 | 1858 | 22 | 8 | 36.3636 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.3256 | 94.9234 | 99.8525 | 39.2800 | 3347 | 179 | 3385 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.7460 | 99.7576 | 95.8140 | 68.5212 | 823 | 2 | 824 | 36 | 35 | 97.2222 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.5589 | 95.6625 | 99.5320 | 31.5275 | 8888 | 403 | 8932 | 42 | 40 | 95.2381 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.4223 | 99.8206 | 99.0272 | 61.0885 | 8345 | 15 | 8347 | 82 | 80 | 97.5610 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0590 | 97.3516 | 98.7767 | 53.3290 | 17203 | 468 | 17199 | 213 | 200 | 93.8967 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.2104 | 98.0157 | 98.4058 | 67.0172 | 5730 | 116 | 5679 | 92 | 83 | 90.2174 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.5549 | 95.7315 | 99.4491 | 28.9744 | 7715 | 344 | 7762 | 43 | 41 | 95.3488 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8687 | 99.7876 | 97.9666 | 56.5178 | 3758 | 8 | 3758 | 78 | 76 | 97.4359 | |
| jli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.5168 | 96.7193 | 98.3276 | 70.0415 | 4835 | 164 | 4821 | 82 | 63 | 76.8293 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.6502 | 96.4816 | 96.8193 | 81.9352 | 1755 | 64 | 1522 | 50 | 37 | 74.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.3685 | 95.4428 | 99.3735 | 36.0555 | 1843 | 88 | 2062 | 13 | 13 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.7625 | 99.0392 | 98.4873 | 71.5773 | 1237 | 12 | 1237 | 19 | 13 | 68.4211 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.7392 | 98.1151 | 99.3713 | 57.1912 | 30816 | 592 | 30820 | 195 | 176 | 90.2564 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.1054 | 98.7352 | 99.4784 | 63.8767 | 13583 | 174 | 13541 | 71 | 56 | 78.8732 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0795 | 96.5665 | 99.6406 | 67.0543 | 15525 | 552 | 15525 | 56 | 32 | 57.1429 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.6389 | 97.8193 | 99.4723 | 75.3576 | 6280 | 140 | 6221 | 33 | 10 | 30.3030 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6611 | 93.5380 | 100.0000 | 39.2016 | 5515 | 381 | 5574 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2813 | 99.1758 | 99.3872 | 70.5555 | 3730 | 31 | 3730 | 23 | 22 | 95.6522 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2064 | 95.5068 | 98.9676 | 53.3545 | 16877 | 794 | 16872 | 176 | 162 | 92.0455 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.5955 | 95.4157 | 97.8049 | 67.5959 | 5578 | 268 | 5525 | 124 | 115 | 92.7419 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7735 | 93.7833 | 99.9606 | 29.6505 | 7558 | 501 | 7606 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0206 | 99.3362 | 98.7071 | 54.3318 | 3741 | 25 | 3741 | 49 | 45 | 91.8367 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.0406 | 95.3595 | 98.7821 | 83.5045 | 1459 | 71 | 1460 | 18 | 9 | 50.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.0766 | 95.1952 | 99.0338 | 86.4144 | 634 | 32 | 615 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.0452 | 94.5372 | 99.6899 | 70.9197 | 623 | 36 | 643 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.8825 | 98.5366 | 95.2830 | 90.2349 | 202 | 3 | 202 | 10 | 7 | 70.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1733 | 95.1598 | 99.2739 | 61.8292 | 6016 | 306 | 6016 | 44 | 38 | 86.3636 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.8828 | 96.4992 | 99.3067 | 73.9583 | 1902 | 69 | 1862 | 13 | 8 | 61.5385 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.5539 | 93.3636 | 99.9700 | 43.1520 | 3292 | 234 | 3332 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.0322 | 99.6364 | 96.4789 | 69.7121 | 822 | 3 | 822 | 30 | 29 | 96.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0742 | 96.5582 | 99.6386 | 56.1134 | 30327 | 1081 | 30328 | 110 | 94 | 85.4545 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.1075 | 96.6926 | 99.5645 | 63.4833 | 13302 | 455 | 13260 | 58 | 44 | 75.8621 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7097 | 93.6390 | 99.9886 | 31.7888 | 8700 | 591 | 8743 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.4861 | 99.5813 | 99.3911 | 58.2577 | 8325 | 35 | 8325 | 51 | 50 | 98.0392 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.1804 | 98.6259 | 99.7411 | 70.8758 | 45074 | 628 | 45075 | 117 | 14 | 11.9658 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.7796 | 97.9625 | 99.6105 | 70.5385 | 28127 | 585 | 28128 | 110 | 10 | 9.0909 | |