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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1398 1399 1400 1401 1402 1403 1404 1405 1406 ... 1720 1721 » 70051-70100 / 86044 show all
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	92.5616	97.8195	87.8400	82.6726	1301	29	1098	152	125	82.2368
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.4937	90.2365	99.1726	34.9981	1488	161	1678	14	14	100.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.3938	98.5294	98.2585	65.1438	1072	16	1072	19	14	73.6842
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.1373	96.5750	99.7509	81.8576	4004	142	4004	10	3	30.0000
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.2324	94.9716	99.6035	82.0153	2512	133	2512	10	3	30.0000
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	95.8333	3	0	3	0	0
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6987	99.3992	100.0000	81.4570	1489	9	1489	0	0
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	95.2407	94.4809	96.0129	51.7704	13969	816	13967	580	530	91.3793
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	95.1497	98.3806	92.1243	67.5306	4374	72	4328	370	327	88.3784
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.4663	89.9219	99.4945	27.8754	6451	723	6495	33	28	84.8485
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	96.9473	99.3365	94.6703	50.0000	3144	21	3144	177	175	98.8701
jlack-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5047	99.5794	99.4300	77.4061	6629	28	6629	38	7	18.4211
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3289	99.5281	99.1304	78.8666	4218	20	4218	37	6	16.2162
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	92.5926	2	0	2	0	0
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8135	99.6690	99.9585	74.2163	2409	8	2409	1	1	100.0000
jmaeng-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.4052	96.7970	98.0210	61.6169	41947	1388	41755	843	795	94.3060
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.0265	98.4792	97.5780	71.1859	17548	271	17163	426	391	91.7840
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.8065	92.2605	99.6360	30.7769	12946	1086	13139	48	48	100.0000
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2837	99.7301	96.8787	61.7262	11453	31	11453	369	356	96.4770
jmaeng-gatk	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.3377	99.4935	99.1825	82.1709	4125	21	4125	34	6	17.6471
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.0767	99.3951	98.7603	83.0758	2629	16	2629	33	6	18.1818
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	93.8776	3	0	3	0	0
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7995	99.6662	99.9331	80.2093	1493	5	1493	1	0	0.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.6651	96.3610	96.9712	69.6092	3919	148	3906	122	111	90.9836
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	95.6412	98.4962	92.9471	83.5315	1310	20	1107	84	79	94.0476
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.7772	92.5409	99.2481	35.3886	1526	123	1716	13	13	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.6339	99.5404	97.7437	66.8858	1083	5	1083	25	19	76.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.4405	99.5463	99.3348	79.5031	10752	49	10752	72	13	18.0556
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.2319	99.4770	98.9880	80.7127	6847	36	6847	70	12	17.1429
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	93.8776	3	0	3	0	0

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