PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6951-7000 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I6_15 | map_siren | hetalt | 90.3704 | 84.7222 | 96.8254 | 79.8077 | 61 | 11 | 61 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_siren | homalt | 95.0820 | 96.6667 | 93.5484 | 80.3383 | 87 | 3 | 87 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 84.6154 | 95.9752 | 0 | 0 | 11 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 100.0000 | 97.3856 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 75.0000 | 92.5926 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 80.0000 | 95.6897 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_siren | * | 81.9080 | 78.5855 | 85.5238 | 80.3591 | 400 | 109 | 449 | 76 | 58 | 76.3158 | |
| eyeh-varpipe | INDEL | D6_15 | map_siren | het | 93.1960 | 92.8571 | 93.5374 | 77.7104 | 260 | 20 | 275 | 19 | 15 | 78.9474 | |
| eyeh-varpipe | INDEL | D6_15 | map_siren | hetalt | 41.0050 | 26.2626 | 93.4783 | 86.5103 | 26 | 73 | 43 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_siren | homalt | 78.3526 | 87.6923 | 70.8108 | 81.7374 | 114 | 16 | 131 | 54 | 40 | 74.0741 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | * | 44.1848 | 30.2326 | 82.0513 | 68.0328 | 26 | 60 | 32 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | het | 43.6447 | 30.6122 | 76.0000 | 62.1212 | 15 | 34 | 19 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | hetalt | 22.2222 | 12.5000 | 100.0000 | 75.0000 | 2 | 14 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | homalt | 58.4071 | 42.8571 | 91.6667 | 75.0000 | 9 | 12 | 11 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | * | 96.0860 | 95.6406 | 96.5357 | 78.7530 | 2874 | 131 | 3316 | 119 | 92 | 77.3109 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | het | 97.1764 | 97.3825 | 96.9713 | 77.3988 | 1637 | 44 | 1889 | 59 | 41 | 69.4915 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | hetalt | 65.0004 | 49.1071 | 96.1039 | 90.3266 | 55 | 57 | 74 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | homalt | 96.7348 | 97.5248 | 95.9574 | 79.1173 | 1182 | 30 | 1353 | 57 | 49 | 85.9649 | |
| eyeh-varpipe | INDEL | D1_5 | map_siren | * | 97.2391 | 97.2230 | 97.2552 | 80.6160 | 3431 | 98 | 3685 | 104 | 64 | 61.5385 | |
| eyeh-varpipe | INDEL | D1_5 | map_siren | het | 98.6360 | 98.8142 | 98.4583 | 78.5963 | 2250 | 27 | 2363 | 37 | 14 | 37.8378 | |
| eyeh-varpipe | INDEL | D1_5 | map_siren | hetalt | 50.2165 | 34.5238 | 92.0635 | 93.5910 | 29 | 55 | 58 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_siren | homalt | 96.9490 | 98.6301 | 95.3243 | 81.9616 | 1152 | 16 | 1264 | 62 | 47 | 75.8065 | |
| eyeh-varpipe | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 88.0342 | 95.2993 | 0 | 0 | 103 | 14 | 5 | 35.7143 | |
| eyeh-varpipe | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 83.3333 | 95.1299 | 0 | 0 | 50 | 10 | 2 | 20.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 84.6154 | 96.8675 | 0 | 0 | 11 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 95.4545 | 94.7743 | 0 | 0 | 42 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | * | 64.7096 | 56.6434 | 75.4545 | 82.7316 | 81 | 62 | 83 | 27 | 22 | 81.4815 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | het | 77.8836 | 75.6410 | 80.2632 | 78.7709 | 59 | 19 | 61 | 15 | 15 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | hetalt | 22.2222 | 12.9032 | 80.0000 | 93.5897 | 4 | 27 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | homalt | 57.1429 | 52.9412 | 62.0690 | 85.5721 | 18 | 16 | 18 | 11 | 6 | 54.5455 | |
| dgrover-gatk | INDEL | D6_15 | map_siren | * | 97.7320 | 97.4460 | 98.0198 | 85.5879 | 496 | 13 | 495 | 10 | 2 | 20.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_siren | het | 97.6859 | 98.2143 | 97.1631 | 87.7445 | 275 | 5 | 274 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_siren | hetalt | 96.9072 | 94.9495 | 98.9474 | 76.0101 | 94 | 5 | 94 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.1388 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_siren | * | 97.1901 | 96.3934 | 98.0000 | 85.1852 | 294 | 11 | 294 | 6 | 4 | 66.6667 | |
| dgrover-gatk | INDEL | I6_15 | map_siren | het | 96.7972 | 95.1049 | 98.5507 | 86.9194 | 136 | 7 | 136 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_siren | hetalt | 97.8723 | 95.8333 | 100.0000 | 78.5047 | 69 | 3 | 69 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_siren | homalt | 97.2678 | 98.8889 | 95.6989 | 85.6703 | 89 | 1 | 89 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | * | map_siren | * | 99.6607 | 99.6410 | 99.6805 | 56.6949 | 145703 | 525 | 145680 | 467 | 103 | 22.0557 | |
| dgrover-gatk | SNP | * | map_siren | het | 99.5699 | 99.6197 | 99.5201 | 59.7603 | 90645 | 346 | 90631 | 437 | 77 | 17.6201 | |
| dgrover-gatk | SNP | * | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 70.3008 | 79 | 2 | 79 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_siren | homalt | 99.8121 | 99.6791 | 99.9455 | 50.4067 | 54979 | 177 | 54970 | 30 | 26 | 86.6667 | |
| dgrover-gatk | SNP | ti | map_siren | * | 99.6765 | 99.6403 | 99.7128 | 55.1320 | 99994 | 361 | 99979 | 288 | 68 | 23.6111 | |
| dgrover-gatk | SNP | ti | map_siren | het | 99.5897 | 99.6105 | 99.5689 | 58.1271 | 62139 | 243 | 62130 | 269 | 51 | 18.9591 | |
| dgrover-gatk | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 68.8889 | 56 | 1 | 56 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_siren | homalt | 99.8204 | 99.6914 | 99.9498 | 49.0891 | 37799 | 117 | 37793 | 19 | 17 | 89.4737 | |
| dgrover-gatk | INDEL | I1_5 | map_siren | * | 99.2843 | 99.1348 | 99.4343 | 81.3909 | 2979 | 26 | 2988 | 17 | 5 | 29.4118 | |
| dgrover-gatk | INDEL | I1_5 | map_siren | het | 99.0766 | 98.8102 | 99.3445 | 82.4495 | 1661 | 20 | 1667 | 11 | 1 | 9.0909 | |
| dgrover-gatk | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.4713 | 109 | 3 | 109 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_siren | homalt | 99.6298 | 99.7525 | 99.5074 | 78.6951 | 1209 | 3 | 1212 | 6 | 4 | 66.6667 | |