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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1392 1393 1394 1395 1396 1397 1398 1399 1400 ... 1720 1721 » 69751-69800 / 86044 show all
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	40.0000	33.3333	50.0000	98.1982	1	2	1	1	0	0.0000
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	88.5191	81.9668	96.2101	86.7350	3209	706	3224	127	53	41.7323
gduggal-snapplat	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*		0.0000	0.0000	92.0000	0	0	0	2	0	0.0000
gduggal-snapplat	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het		0.0000	0.0000	90.4762	0	0	0	2	0	0.0000
gduggal-snapplat	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	60.3422	54.4854	67.6098	69.0550	12123	10127	15818	7578	3735	49.2874
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	58.8795	58.5755	59.1866	73.4509	4918	3478	6913	4767	1577	33.0816
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	56.1615	41.5637	86.5642	60.9124	3397	4776	3434	533	458	85.9287
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	68.7702	67.0305	70.6027	63.8943	3808	1873	5471	2278	1700	74.6269
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	51.1782	35.9607	88.7235	60.7545	5046	8986	5067	644	550	85.4037
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	59.2248	49.9739	72.6787	68.3719	5739	5745	7342	2760	1993	72.2101
gduggal-snapplat	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*		0.0000	0.0000	0.0000	0	4067	0	0	0
gduggal-snapplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het		0.0000	0.0000	0.0000	0	1330	0	0	0
gduggal-snapplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	1649	0	0	0
gduggal-snapplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	1088	0	0	0
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	54.3229	97.9257	37.5868	83.5805	4060	86	4112	6828	99	1.4499
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	46.2642	97.2779	30.3489	80.4847	2573	72	2627	6029	58	0.9620
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	3.6810	100.0000	1.8750	78.4657	3	0	3	157	3	1.9108
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	81.8789	99.0654	69.7740	90.1347	1484	14	1482	642	38	5.9190
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	50.2628	41.8345	62.9440	73.1508	18129	25206	21603	12718	4309	33.8811
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	45.0513	41.2144	49.6758	77.2450	7344	10475	9194	9314	1766	18.9607
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	51.3775	37.0578	83.7332	64.5819	5479	9306	5235	1017	480	47.1976
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	44.4716	32.8160	68.9674	74.6267	1459	2987	1289	580	148	25.5172
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	52.7132	36.3814	95.6522	52.4661	2610	4564	2618	119	102	85.7143
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	57.4030	44.5498	80.6804	63.6484	1410	1755	1328	318	230	72.3270
gduggal-snapplat	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	46.4146	34.9744	68.9769	73.6604	2941	5468	2926	1316	1208	91.7933
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	77.2126	92.3546	66.3363	73.7008	2271	188	2276	1155	1093	94.6320
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	0.0000	0.4191	0.0000	0.0000	20	4752	0	0	0
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	65.3595	55.1783	80.1480	73.4881	650	528	650	161	115	71.4286
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	49.3962	45.5461	53.9573	55.1768	10134	12116	10117	8633	8451	97.8918
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	65.2473	96.5460	49.2736	54.6440	8106	290	8140	8380	8238	98.3055
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	0.0000	0.5384	0.0000	0.0000	44	8129	0	0	0
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	50.1080	34.9234	88.6547	58.7648	1984	3697	1977	253	213	84.1897
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	39.0121	35.9892	42.5893	55.2279	5321	9464	5316	7166	7112	99.2464
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	54.4494	95.7490	38.0411	54.7898	4257	189	4280	6971	6935	99.4836
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	0.0000	0.3624	0.0000	0.0000	26	7148	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	47.1992	32.7962	84.1592	58.8707	1038	2127	1036	195	177	90.7692
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	87.7327	97.7687	79.5653	85.1430	10560	241	10653	2736	243	8.8816
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	83.8511	96.7311	73.9980	86.2278	6658	225	6739	2368	15	0.6334
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	95.3583	99.6679	91.4059	82.1531	3902	13	3914	368	228	61.9565

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