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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69651-69700 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 84.4254 | 74.7368 | 97.0000 | 58.7912 | 284 | 96 | 291 | 9 | 8 | 88.8889 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 82.2869 | 90.1639 | 75.6757 | 84.0173 | 55 | 6 | 56 | 18 | 12 | 66.6667 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 79.1116 | 70.1992 | 90.6162 | 65.8002 | 2855 | 1212 | 2897 | 300 | 268 | 89.3333 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 85.9953 | 87.2932 | 84.7354 | 73.4127 | 1161 | 169 | 1249 | 225 | 212 | 94.2222 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 58.3543 | 41.3584 | 99.0640 | 45.3538 | 682 | 967 | 635 | 6 | 6 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.3178 | 93.0147 | 93.6229 | 58.8750 | 1012 | 76 | 1013 | 69 | 50 | 72.4638 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 85.6704 | 84.8021 | 86.5567 | 80.2451 | 36749 | 6586 | 37209 | 5779 | 5249 | 90.8289 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 86.2517 | 96.2231 | 78.1528 | 59.6097 | 17146 | 673 | 18083 | 5055 | 4861 | 96.1622 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 75.9388 | 61.7232 | 98.6618 | 39.1505 | 8661 | 5371 | 8184 | 111 | 101 | 90.9910 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.9868 | 95.2804 | 94.6949 | 56.1929 | 10942 | 542 | 10942 | 613 | 287 | 46.8189 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 63.9682 | 59.1207 | 69.6815 | 44.3739 | 8741 | 6044 | 8729 | 3798 | 3701 | 97.4460 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 87.9611 | 84.4804 | 91.7409 | 50.5473 | 3756 | 690 | 3399 | 306 | 289 | 94.4444 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 43.9004 | 28.4500 | 96.0776 | 48.1986 | 2041 | 5133 | 2376 | 97 | 95 | 97.9381 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 62.0279 | 93.0174 | 46.5270 | 38.0827 | 2944 | 221 | 2954 | 3395 | 3317 | 97.7025 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 62.7586 | 94.9565 | 0 | 0 | 91 | 54 | 38 | 70.3704 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 82.1429 | 96.4780 | 0 | 0 | 23 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 80.0000 | 94.8454 | 0 | 0 | 44 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 38.7097 | 93.8796 | 0 | 0 | 24 | 38 | 25 | 65.7895 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 47.7873 | 41.5540 | 56.2207 | 53.8295 | 1690 | 2377 | 1681 | 1309 | 1280 | 97.7846 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 61.2415 | 62.4812 | 60.0500 | 60.0866 | 831 | 499 | 720 | 479 | 472 | 98.5386 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 26.6884 | 15.5852 | 92.8021 | 65.3298 | 257 | 1392 | 361 | 28 | 27 | 96.4286 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 48.2628 | 55.3309 | 42.7960 | 40.3404 | 602 | 486 | 600 | 802 | 781 | 97.3815 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 76.1646 | 71.9865 | 80.8576 | 48.0795 | 16017 | 6233 | 16537 | 3915 | 3818 | 97.5223 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 93.8809 | 89.9476 | 98.1740 | 49.0700 | 7552 | 844 | 7527 | 140 | 92 | 65.7143 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 50.8522 | 34.3937 | 97.5171 | 49.4033 | 2811 | 5362 | 3142 | 80 | 77 | 96.2500 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 75.9168 | 99.5247 | 61.3615 | 46.7806 | 5654 | 27 | 5868 | 3695 | 3649 | 98.7551 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 67.3074 | 57.8428 | 80.4752 | 45.6223 | 4864 | 3545 | 13445 | 3262 | 3175 | 97.3329 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 91.3228 | 88.0846 | 94.8081 | 46.5735 | 2166 | 293 | 7140 | 391 | 343 | 87.7238 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 50.3229 | 33.8852 | 97.7333 | 47.5634 | 1617 | 3155 | 2587 | 60 | 56 | 93.3333 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 70.2794 | 91.7657 | 56.9459 | 43.6183 | 1081 | 97 | 3718 | 2811 | 2776 | 98.7549 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 48.9376 | 37.8496 | 69.2135 | 34.1472 | 1475 | 2422 | 4928 | 2192 | 2178 | 99.3613 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 73.5605 | 66.5605 | 82.2059 | 36.1952 | 627 | 315 | 2236 | 484 | 477 | 98.5537 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 37.9488 | 23.6006 | 96.7984 | 42.1136 | 624 | 2020 | 1421 | 47 | 47 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 54.1237 | 72.0257 | 43.3492 | 26.9375 | 224 | 87 | 1271 | 1661 | 1654 | 99.5786 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 22.7618 | 14.1194 | 58.6792 | 46.6264 | 97 | 590 | 311 | 219 | 217 | 99.0868 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 27.4282 | 17.8862 | 58.7940 | 51.5815 | 44 | 202 | 117 | 82 | 82 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 14.5540 | 7.8947 | 93.0000 | 54.7511 | 30 | 350 | 93 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 40.4915 | 37.7049 | 43.7229 | 36.0111 | 23 | 38 | 101 | 130 | 128 | 98.4615 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 65.6652 | 95.8907 | 0 | 0 | 153 | 80 | 52 | 65.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 79.4118 | 96.3362 | 0 | 0 | 54 | 14 | 3 | 21.4286 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 72.1154 | 94.9392 | 0 | 0 | 75 | 29 | 27 | 93.1034 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 39.3443 | 96.5321 | 0 | 0 | 24 | 37 | 22 | 59.4595 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 50.3682 | 49.0920 | 51.7125 | 68.7841 | 21274 | 22061 | 21244 | 19837 | 19439 | 97.9936 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 62.8376 | 94.6349 | 47.0342 | 60.4447 | 16863 | 956 | 16945 | 19082 | 18800 | 98.5222 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.7198 | 0.0000 | 0.0000 | 101 | 13931 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 52.0817 | 37.5305 | 85.0613 | 64.9709 | 4310 | 7174 | 4299 | 755 | 639 | 84.6358 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 82.8968 | 94.7123 | 73.7023 | 85.2096 | 6305 | 352 | 6233 | 2224 | 80 | 3.5971 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 76.8434 | 94.7617 | 64.6239 | 86.6785 | 4016 | 222 | 3986 | 2182 | 61 | 2.7956 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.3822 | 94.6628 | 98.1651 | 78.9575 | 2288 | 129 | 2247 | 42 | 19 | 45.2381 | |