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Explore HG002 comparison results
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EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
69551-69600 / 86044 show all
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
60.0000
20200
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
96.0776
92.7182
99.6894
66.0081
2241176224776
85.7143
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
70.1173
56.6230
92.0561
70.3396
3892983943420
58.8235
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
70.9431
59.3496
88.1657
78.6885
146100149209
45.0000
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
68.0484
51.8421
98.9950
48.4456
19718319722
100.0000
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
77.6371
75.4098
80.0000
77.2727
461548129
75.0000
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.6123
74.0570
95.9987
49.9006
28861011290312183
68.5950
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
84.3015
79.4055
89.8409
68.3211
7481947348352
62.6506
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
83.0301
71.4070
99.1727
30.3565
188875619181611
68.7500
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
85.7762
80.3859
91.9414
59.8529
250612512220
90.9091
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
93.1844
90.2139
96.3573
74.4602
974410579893374179
47.8610
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
92.9113
89.3360
96.7846
77.0025
6149734629120919
9.0909
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
78.5714
30300
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.5449
91.7497
99.6677
68.0131
35923233599129
75.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.4585
97.1390
97.7802
53.9739
1436242314360326315
96.6258
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.6979
99.1678
96.2710
69.5061
4409374363169161
95.2663
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.0365
94.6613
99.5340
28.2145
679138368353230
93.7500
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.0161
99.9052
96.1971
56.0561
316233162125124
99.2000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5642
99.5193
99.6091
77.5046
6625326625268
30.7692
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.4457
99.4809
99.4105
79.4316
4216224216257
28.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.3077
20200
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7720
99.5863
99.9585
73.0075
240710240711
100.0000
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.1949
97.6719
98.7235
54.4572
2173251821733281265
94.3060
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8574
99.1901
98.5270
64.5573
8328688294124111
89.5161
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.0455
94.6164
99.6025
28.0867
773344077683129
93.5484
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.8151
99.8240
97.8265
57.8124
5671105671126125
99.2063
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5323
99.5000
99.5646
79.8322
1074754107474715
31.9149
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.3829
99.4334
99.3324
81.4625
68443968444614
30.4348
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.1818
30300
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7953
99.6169
99.9744
76.0807
390015390011
100.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7354
96.2302
99.2883
62.1142
809231780925849
84.4828
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.9105
98.7393
99.0822
76.8986
24283123752213
59.0909
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.9791
94.1744
99.9560
31.2217
4494278454722
100.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.2368
99.3209
97.1761
73.3746
1170811703434
100.0000
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.1945
95.5607
98.8851
56.8401
372417337254235
83.3333
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.2146
97.6645
98.7709
74.8454
92022884115
45.4545
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.0047
94.2890
99.8816
37.0370
2493151253033
100.0000
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.6923
100.0000
91.7404
70.4446
31103112827
96.4286
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4814
99.4694
99.4934
82.7155
4124224124217
33.3333
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2822
99.3573
99.2072
83.9930
2628172628217
33.3333
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.1818
30300
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.8328
99.6662
100.0000
79.7916
14935149300
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.0727
94.3231
97.8884
82.5020
648396491411
78.5714
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.6277
95.1220
98.1818
88.6246
2341221642
50.0000
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0678
92.8947
99.4652
64.2789
3532737222
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
93.8462
100.0000
88.4058
91.4604
6106187
87.5000
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5262
99.3991
99.6536
77.7226
6617406617239
39.1304
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.4334
99.3865
99.4804
79.7057
4212264212228
36.3636
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.7500
20200
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6889
99.4208
99.9584
73.0221
240314240311
100.0000