PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6901-6950 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D1_5 | map_siren | het | 98.6006 | 98.9899 | 98.2143 | 79.8047 | 2254 | 23 | 2255 | 41 | 14 | 34.1463 | |
| egarrison-hhga | INDEL | D1_5 | map_siren | hetalt | 87.4083 | 78.5714 | 98.4848 | 91.1409 | 66 | 18 | 65 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_siren | homalt | 99.4012 | 99.4863 | 99.3162 | 80.2231 | 1162 | 6 | 1162 | 8 | 7 | 87.5000 | |
| egarrison-hhga | INDEL | D6_15 | map_siren | * | 91.4556 | 90.1768 | 92.7711 | 83.2942 | 459 | 50 | 462 | 36 | 21 | 58.3333 | |
| egarrison-hhga | INDEL | D6_15 | map_siren | het | 94.1776 | 98.5714 | 90.1587 | 84.4291 | 276 | 4 | 284 | 31 | 19 | 61.2903 | |
| egarrison-hhga | INDEL | D6_15 | map_siren | hetalt | 72.8695 | 58.5859 | 96.3636 | 78.5992 | 58 | 41 | 53 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_siren | homalt | 96.8992 | 96.1538 | 97.6562 | 81.7404 | 125 | 5 | 125 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | C6_15 | map_siren | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | SNP | tv | map_siren | * | 99.6255 | 99.6408 | 99.6103 | 59.7727 | 45765 | 165 | 45757 | 179 | 35 | 19.5531 | |
| dgrover-gatk | SNP | tv | map_siren | het | 99.5269 | 99.6400 | 99.4140 | 62.9092 | 28506 | 103 | 28501 | 168 | 26 | 15.4762 | |
| dgrover-gatk | SNP | tv | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 70.3008 | 79 | 2 | 79 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_siren | homalt | 99.7938 | 99.6520 | 99.9360 | 53.0780 | 17180 | 60 | 17177 | 11 | 9 | 81.8182 | |
| egarrison-hhga | INDEL | * | map_siren | * | 97.8660 | 97.7598 | 97.9724 | 96.4159 | 7244 | 166 | 7248 | 150 | 78 | 52.0000 | |
| egarrison-hhga | INDEL | C1_5 | map_siren | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | map_siren | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I1_5 | map_siren | * | 99.0333 | 98.8686 | 99.1987 | 80.5885 | 2971 | 34 | 2971 | 24 | 6 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_siren | het | 98.8677 | 98.6913 | 99.0448 | 81.1755 | 1659 | 22 | 1659 | 16 | 2 | 12.5000 | |
| egarrison-hhga | INDEL | I1_5 | map_siren | hetalt | 97.7169 | 95.5357 | 100.0000 | 88.2029 | 107 | 5 | 107 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_siren | homalt | 99.3814 | 99.4224 | 99.3405 | 78.4317 | 1205 | 7 | 1205 | 8 | 4 | 50.0000 | |
| egarrison-hhga | SNP | ti | map_siren | * | 99.6715 | 99.4669 | 99.8769 | 52.8764 | 99820 | 535 | 99821 | 123 | 54 | 43.9024 | |
| egarrison-hhga | SNP | ti | map_siren | het | 99.5580 | 99.2867 | 99.8308 | 53.2460 | 61937 | 445 | 61938 | 105 | 38 | 36.1905 | |
| egarrison-hhga | SNP | ti | map_siren | hetalt | 95.4955 | 92.9825 | 98.1481 | 75.0000 | 53 | 4 | 53 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_siren | homalt | 99.8640 | 99.7732 | 99.9551 | 52.1965 | 37830 | 86 | 37830 | 17 | 15 | 88.2353 | |
| egarrison-hhga | SNP | tv | map_siren | * | 99.6246 | 99.3686 | 99.8818 | 55.8072 | 45640 | 290 | 45640 | 54 | 25 | 46.2963 | |
| egarrison-hhga | SNP | tv | map_siren | het | 99.4896 | 99.1331 | 99.8486 | 55.6665 | 28361 | 248 | 28361 | 43 | 15 | 34.8837 | |
| egarrison-hhga | SNP | tv | map_siren | hetalt | 96.2025 | 93.8272 | 98.7013 | 75.7098 | 76 | 5 | 76 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_siren | homalt | 99.8636 | 99.7854 | 99.9419 | 55.8765 | 17203 | 37 | 17203 | 10 | 9 | 90.0000 | |
| eyeh-varpipe | INDEL | * | map_siren | * | 94.7665 | 94.1296 | 95.4122 | 91.1520 | 6975 | 435 | 7882 | 379 | 279 | 73.6148 | |
| eyeh-varpipe | INDEL | * | map_siren | het | 96.4251 | 96.0958 | 96.7566 | 78.9179 | 4332 | 176 | 4803 | 161 | 108 | 67.0807 | |
| eyeh-varpipe | INDEL | * | map_siren | hetalt | 51.9925 | 36.0324 | 93.3333 | 92.3928 | 89 | 158 | 154 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | * | map_siren | homalt | 94.7726 | 96.1959 | 93.3908 | 81.3483 | 2554 | 101 | 2925 | 207 | 162 | 78.2609 | |
| eyeh-varpipe | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 98.5075 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | INDEL | C16_PLUS | map_siren | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| egarrison-hhga | SNP | * | map_siren | * | 99.6583 | 99.4385 | 99.8791 | 53.8224 | 145407 | 821 | 145408 | 176 | 78 | 44.3182 | |
| egarrison-hhga | SNP | * | map_siren | het | 99.5365 | 99.2384 | 99.8364 | 54.0342 | 90298 | 693 | 90299 | 148 | 53 | 35.8108 | |
| egarrison-hhga | SNP | * | map_siren | hetalt | 96.2025 | 93.8272 | 98.7013 | 75.7098 | 76 | 5 | 76 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_siren | homalt | 99.8639 | 99.7770 | 99.9510 | 53.4112 | 55033 | 123 | 55033 | 27 | 24 | 88.8889 | |
| egarrison-hhga | INDEL | I16_PLUS | map_siren | * | 83.2113 | 80.2326 | 86.4198 | 84.0551 | 69 | 17 | 70 | 11 | 7 | 63.6364 | |
| egarrison-hhga | INDEL | I16_PLUS | map_siren | het | 86.8687 | 87.7551 | 86.0000 | 83.9744 | 43 | 6 | 43 | 7 | 4 | 57.1429 | |
| egarrison-hhga | INDEL | I16_PLUS | map_siren | hetalt | 78.8060 | 68.7500 | 92.3077 | 82.6667 | 11 | 5 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_siren | homalt | 76.9231 | 71.4286 | 83.3333 | 85.1240 | 15 | 6 | 15 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I6_15 | map_siren | * | 94.0978 | 91.4754 | 96.8750 | 81.5974 | 279 | 26 | 279 | 9 | 8 | 88.8889 | |
| egarrison-hhga | INDEL | I6_15 | map_siren | het | 95.2727 | 91.6084 | 99.2424 | 83.0769 | 131 | 12 | 131 | 1 | 1 | 100.0000 | |