PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69251-69300 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.7189 | 91.8273 | 99.9549 | 27.3874 | 4382 | 390 | 4431 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.1956 | 99.3209 | 97.0954 | 73.3937 | 1170 | 8 | 1170 | 35 | 35 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 49.3606 | 38.1496 | 69.9029 | 67.8340 | 3208 | 5201 | 3024 | 1302 | 965 | 74.1167 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 79.5334 | 83.2452 | 76.1384 | 70.7854 | 2047 | 412 | 2090 | 655 | 364 | 55.5725 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 4.4216 | 0.0000 | 0.0000 | 211 | 4561 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 68.1961 | 80.6452 | 59.0765 | 60.9919 | 950 | 228 | 934 | 647 | 601 | 92.8903 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 69.6749 | 94.4284 | 55.2038 | 82.9047 | 3915 | 231 | 3941 | 3198 | 130 | 4.0650 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 62.8906 | 92.3251 | 47.6872 | 81.6922 | 2442 | 203 | 2464 | 2703 | 33 | 1.2209 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 40.0000 | 66.6667 | 28.5714 | 89.7059 | 2 | 1 | 2 | 5 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 85.0862 | 98.1976 | 75.0636 | 85.4109 | 1471 | 27 | 1475 | 490 | 97 | 19.7959 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 74.2906 | 94.9819 | 61.0017 | 81.9477 | 10259 | 542 | 10341 | 6611 | 313 | 4.7345 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 68.0380 | 93.0844 | 53.6124 | 81.3886 | 6407 | 476 | 6493 | 5618 | 90 | 1.6020 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 40.0000 | 66.6667 | 28.5714 | 89.7059 | 2 | 1 | 2 | 5 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 87.9595 | 98.3397 | 79.5614 | 83.1943 | 3850 | 65 | 3846 | 988 | 223 | 22.5709 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 77.4124 | 95.3132 | 65.1724 | 81.3112 | 6345 | 312 | 6426 | 3434 | 185 | 5.3873 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 71.6485 | 93.5583 | 58.0534 | 81.2561 | 3965 | 273 | 4044 | 2922 | 58 | 1.9849 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 33.3333 | 50.0000 | 25.0000 | 89.1892 | 1 | 1 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 89.6962 | 98.4278 | 82.3875 | 81.4243 | 2379 | 38 | 2381 | 509 | 127 | 24.9509 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 20.1055 | 12.5225 | 50.9714 | 65.7132 | 488 | 3409 | 446 | 429 | 399 | 93.0070 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 42.6673 | 30.3609 | 71.7500 | 71.1191 | 286 | 656 | 287 | 113 | 96 | 84.9558 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 1.5129 | 0.0000 | 0.0000 | 40 | 2604 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 40.7567 | 52.0900 | 33.4737 | 59.2973 | 162 | 149 | 159 | 316 | 303 | 95.8861 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.4130 | 97.1455 | 97.6820 | 62.4233 | 42098 | 1237 | 41887 | 994 | 949 | 95.4728 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8987 | 98.8832 | 98.9142 | 71.1221 | 17620 | 199 | 17218 | 189 | 154 | 81.4815 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.1413 | 92.8877 | 99.6311 | 33.7242 | 13034 | 998 | 13234 | 49 | 49 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.6367 | 99.6517 | 93.7987 | 63.9277 | 11444 | 40 | 11435 | 756 | 746 | 98.6772 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 47.4490 | 43.8282 | 51.7219 | 54.7342 | 6480 | 8305 | 6518 | 6084 | 5189 | 85.2893 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 71.7034 | 76.5182 | 67.4586 | 62.2452 | 3402 | 1044 | 3748 | 1808 | 1171 | 64.7677 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 4.1260 | 0.0000 | 0.0000 | 296 | 6878 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 54.3279 | 87.8989 | 39.3131 | 46.3121 | 2782 | 383 | 2770 | 4276 | 4018 | 93.9663 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 12.6208 | 7.7147 | 34.6667 | 87.4161 | 53 | 634 | 52 | 98 | 77 | 78.5714 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 20.7836 | 13.0081 | 51.6667 | 91.2281 | 32 | 214 | 31 | 29 | 15 | 51.7241 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 380 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 27.8146 | 34.4262 | 23.3333 | 82.2835 | 21 | 40 | 21 | 69 | 62 | 89.8551 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 33.3333 | 96.7302 | 0 | 0 | 8 | 16 | 1 | 6.2500 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 20.0000 | 96.5753 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 36.8421 | 96.7687 | 0 | 0 | 7 | 12 | 1 | 8.3333 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 25.2874 | 96.0490 | 0 | 0 | 22 | 65 | 10 | 15.3846 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 63.6364 | 98.2972 | 0 | 0 | 7 | 4 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 19.7368 | 95.1157 | 0 | 0 | 15 | 61 | 10 | 16.3934 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 47.6114 | 41.5540 | 55.7361 | 61.7356 | 1690 | 2377 | 1681 | 1335 | 1256 | 94.0824 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 60.3225 | 50.6015 | 74.6667 | 66.7122 | 673 | 657 | 728 | 247 | 230 | 93.1174 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 3.4566 | 0.0000 | 0.0000 | 57 | 1592 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 61.0689 | 88.2353 | 46.6928 | 58.7927 | 960 | 128 | 953 | 1088 | 1026 | 94.3015 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 58.6790 | 56.6022 | 60.9139 | 57.4205 | 12594 | 9656 | 12597 | 8083 | 5610 | 69.4049 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 75.4245 | 87.3154 | 66.3840 | 63.3729 | 7331 | 1065 | 7751 | 3925 | 1802 | 45.9108 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 4.7473 | 0.0000 | 0.0000 | 388 | 7785 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 66.1516 | 85.8124 | 53.8205 | 46.0515 | 4875 | 806 | 4846 | 4158 | 3808 | 91.5825 | |