PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1380 1381 1382 1383 1384 1385 1386 1387 1388 ... 1720 1721 » 69151-69200 / 86044 show all
ltrigg-rtg2	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	0.0000	0.0000	91.6667	95.6679	0	0	11	1	1	100.0000
ltrigg-rtg2	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	0.0000	0.0000	100.0000	95.6989	0	0	8	0	0
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.6268	98.9870	98.2693	80.7168	4104	42	4145	73	1	1.3699
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.0783	98.8658	97.3033	81.4881	2615	30	2634	73	1	1.3699
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	90.9091	3	0	4	0	0
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.5979	99.1989	100.0000	79.0898	1486	12	1507	0	0
mlin-fermikit	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
mlin-fermikit	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
mlin-fermikit	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
mlin-fermikit	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	85.8694	82.8315	89.1386	45.6102	18430	3820	18400	2242	2180	97.2346
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	87.7796	92.4607	83.5496	48.0211	7763	633	7725	1521	1474	96.9099
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	77.4004	63.2326	99.7503	28.0442	5168	3005	5193	13	13	100.0000
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	92.4964	96.7963	88.5622	52.1231	5499	182	5482	708	693	97.8814
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	81.8009	78.9787	84.8322	50.9671	11677	3108	11678	2088	2070	99.1379
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	81.2086	91.0256	73.3029	53.9573	4047	399	4017	1463	1454	99.3848
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	77.6790	63.6186	99.7178	29.4964	4564	2610	4593	13	13	100.0000
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	89.6150	96.8720	83.3696	61.8257	3066	99	3068	612	603	98.5294
mlin-fermikit	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	75.6857	66.9578	87.0301	80.4555	460	227	463	69	64	92.7536
mlin-fermikit	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	79.4110	79.6748	79.1489	83.7595	196	50	186	49	46	93.8776
mlin-fermikit	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	69.0769	53.9474	96.0000	65.2241	205	175	216	9	8	88.8889
mlin-fermikit	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	90.3250	96.7213	84.7222	88.5350	59	2	61	11	10	90.9091
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	82.5092	75.5024	90.9494	56.1947	6349	2060	6351	632	617	97.6266
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	87.1157	91.3786	83.2329	63.6787	2247	212	2209	445	437	98.2022
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	76.3374	62.0495	99.1738	31.6467	2961	1811	3001	25	25	100.0000
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	91.9790	96.8591	87.5672	69.0278	1141	37	1141	162	155	95.6790
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	83.4868	81.5589	85.5080	68.6930	3317	750	3316	562	522	92.8826
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	80.6298	89.3985	73.4276	74.6915	1189	141	1039	376	353	93.8830
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	79.5911	66.1007	100.0000	40.0484	1090	559	1238	0	0
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	89.7993	95.4044	84.8163	74.1070	1038	50	1039	186	169	90.8602
mlin-fermikit	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
mlin-fermikit	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
mlin-fermikit	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
mlin-fermikit	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
mlin-fermikit	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
mlin-fermikit	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
mlin-fermikit	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
mlin-fermikit	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.3588	95.3386	99.4664	56.7621	41315	2020	41569	223	143	64.1256
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.3219	95.4262	99.2945	64.0832	17004	815	17030	121	44	36.3636
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.0483	92.8307	99.4969	46.1918	13026	1006	13250	67	66	98.5075
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.9739	98.2672	99.6909	53.0163	11285	199	11289	35	33	94.2857
ltrigg-rtg1	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	0.0000	0.0000	89.6552	95.9778	0	0	26	3	2	66.6667
ltrigg-rtg1	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	0.0000	0.0000	77.7778	96.3415	0	0	7	2	1	50.0000
ltrigg-rtg1	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	0.0000	0.0000	91.6667	95.7447	0	0	11	1	1	100.0000
ltrigg-rtg1	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	0.0000	0.0000	100.0000	95.8549	0	0	8	0	0
jpowers-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	95.1813	97.7317	92.7606	85.9802	10556	245	10635	830	248	29.8795
jpowers-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	95.6086	96.6584	94.5813	87.2366	6653	230	6720	385	17	4.4156
jpowers-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0
jpowers-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.4849	99.6935	89.7936	83.3014	3903	12	3915	445	231	51.9101

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge