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Explore HG002 comparison results
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EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
68951-69000 / 86044 show all
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
77.4166
67.7028
90.3846
37.1872
485723176587069
98.5714
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
78.8680
83.9810
74.3417
54.2249
26585072654916914
99.7817
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
62.0729
98.0650
45.4073
82.4158
105922091075712933236
1.8248
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
53.7666
97.5737
37.1070
80.0383
6716167688011661159
1.3635
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
3.6810
100.0000
1.8750
78.4657
3031573
1.9108
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
87.0072
98.9272
77.6508
87.8604
3873423874111574
6.6368
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
67.6742
98.1523
51.6392
81.2351
653412366476225139
2.2329
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
59.7519
97.7584
43.0248
79.6303
41439542535632101
1.7933
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
3.2258
100.0000
1.6393
75.6487
2021202
1.6667
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
90.5197
98.8415
83.4904
85.3580
238928239247336
7.6110
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
87.5291
86.9258
88.1409
52.6080
1934129092014927111465
54.0391
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
89.3383
88.9709
89.7087
51.9572
7470926125961445343
23.7370
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
85.4215
78.1353
94.2062
35.5484
63861787206512767
52.7559
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
89.1553
96.5499
82.8127
57.5437
5485196548811391055
92.6251
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
75.3753
83.0063
69.0293
65.5447
6980142956392530425
16.7984
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
70.1659
88.4506
58.1458
66.8417
217528427912009225
11.1996
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
83.6293
78.9187
88.9381
47.0175
376610061809225103
45.7778
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
82.6900
88.2003
77.8277
75.2503
1039139103929697
32.7703
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
40.8104
37.5245
44.7270
52.3629
55489237550568036744
99.1327
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
55.2412
96.6262
38.6762
52.9026
4296150428367916733
99.1459
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.2091
0.0000
0.0000
157159000
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
56.0471
39.0837
99.0276
46.9019
1237192812221211
91.6667
gduggal-bwavardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
0.0000
0.0000
59.7222
96.2284
00432912
41.3793
gduggal-bwavardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
0.0000
0.0000
50.0000
96.7213
00282811
39.2857
gduggal-bwavardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-bwavardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
0.0000
0.0000
93.7500
92.0398
001511
100.0000
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
47.8303
45.4143
50.5177
68.7660
18472220185418161681
92.5661
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
56.4307
91.8797
40.7201
70.5769
1222108124418111677
92.6008
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.3639
0.0000
0.0000
61643000
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
72.3100
56.8934
99.1870
55.0110
61946961054
80.0000
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
50.5742
45.9865
56.1787
51.4566
10232120181013879087671
97.0030
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
64.9932
93.6517
49.7646
52.1813
7863533782278967660
97.0111
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.2325
0.0000
0.0000
198154000
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
58.4346
41.3660
99.4845
45.9233
2350333123161211
91.6667
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
44.8658
33.4523
68.1013
69.9638
28135596276912971197
92.2899
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
74.3677
90.7279
63.0063
70.4907
2231228220912971197
92.2899
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.2724
0.0000
0.0000
134759000
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
65.1402
48.3022
100.0000
66.1836
56960956000
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
34.0836
24.4547
56.2198
65.7568
9532944931725695
95.8621
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
66.4455
88.5350
53.1777
65.7562
834108820722692
95.8449
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.2269
0.0000
0.0000
62638000
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
52.9207
36.3344
97.3684
65.7658
11319811133
100.0000
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
37.3529
30.5677
48.0100
79.3529
210477193209153
73.2057
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
58.0656
77.6423
46.3731
78.9760
19155179207152
73.4300
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
1.0526
0.0000
0.0000
4376000
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
38.3912
24.5902
87.5000
85.5856
15461421
50.0000
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
0.0000
0.0000
55.5556
94.9343
0090728
11.1111
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
0.0000
0.0000
52.0000
94.9170
0078728
11.1111
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
95.1417
001200