PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6851-6900 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | map_siren | homalt | 37.0370 | 23.8095 | 83.3333 | 89.6552 | 5 | 16 | 5 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_siren | * | 66.5799 | 58.6885 | 76.9231 | 81.1897 | 179 | 126 | 180 | 54 | 53 | 98.1481 | |
| jpowers-varprowl | INDEL | I6_15 | map_siren | het | 74.0667 | 79.0210 | 69.6970 | 82.9193 | 113 | 30 | 115 | 50 | 50 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 1.3889 | 0.0000 | 0.0000 | 1 | 71 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_siren | homalt | 81.7610 | 72.2222 | 94.2029 | 75.1799 | 65 | 25 | 65 | 4 | 3 | 75.0000 | |
| ckim-vqsr | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | D6_15 | map_siren | * | 97.3325 | 96.8566 | 97.8131 | 86.8634 | 493 | 16 | 492 | 11 | 2 | 18.1818 | |
| ckim-vqsr | INDEL | D6_15 | map_siren | het | 96.9741 | 97.5000 | 96.4539 | 89.3222 | 273 | 7 | 272 | 10 | 2 | 20.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 75.7180 | 93 | 6 | 93 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.0994 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_siren | * | 97.0895 | 96.5116 | 97.6744 | 93.2230 | 83 | 3 | 84 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_siren | het | 95.9184 | 95.9184 | 95.9184 | 92.9900 | 47 | 2 | 47 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_siren | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.9558 | 16 | 0 | 17 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_siren | homalt | 97.5610 | 95.2381 | 100.0000 | 95.6236 | 20 | 1 | 20 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_siren | * | 98.0317 | 96.9052 | 99.1848 | 83.6671 | 2912 | 93 | 2920 | 24 | 8 | 33.3333 | |
| ckim-vqsr | INDEL | I1_5 | map_siren | het | 97.0962 | 95.4194 | 98.8329 | 85.9291 | 1604 | 77 | 1609 | 19 | 5 | 26.3158 | |
| ckim-vqsr | INDEL | I1_5 | map_siren | hetalt | 95.3271 | 91.0714 | 100.0000 | 86.8047 | 102 | 10 | 102 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_siren | homalt | 99.5465 | 99.5050 | 99.5881 | 78.6343 | 1206 | 6 | 1209 | 5 | 3 | 60.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_siren | * | 97.5042 | 96.0656 | 98.9865 | 86.0902 | 293 | 12 | 293 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | I6_15 | map_siren | het | 96.7742 | 94.4056 | 99.2647 | 88.7696 | 135 | 8 | 135 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_siren | hetalt | 97.8723 | 95.8333 | 100.0000 | 76.6892 | 69 | 3 | 69 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_siren | homalt | 98.3425 | 98.8889 | 97.8022 | 85.3462 | 89 | 1 | 89 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_siren | * | 98.3083 | 97.9031 | 98.7169 | 84.9543 | 3455 | 74 | 3462 | 45 | 6 | 13.3333 | |
| ckim-vqsr | INDEL | D1_5 | map_siren | het | 97.8636 | 97.4967 | 98.2332 | 85.9953 | 2220 | 57 | 2224 | 40 | 2 | 5.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_siren | hetalt | 93.6709 | 88.0952 | 100.0000 | 91.2218 | 74 | 10 | 74 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_siren | homalt | 99.4864 | 99.4007 | 99.5723 | 81.4444 | 1161 | 7 | 1164 | 5 | 4 | 80.0000 | |
| ckim-vqsr | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | D16_PLUS | map_siren | * | 93.8073 | 95.8042 | 91.8919 | 95.1823 | 137 | 6 | 136 | 12 | 2 | 16.6667 | |
| ckim-vqsr | INDEL | D16_PLUS | map_siren | het | 92.4513 | 97.4359 | 87.9518 | 96.3127 | 76 | 2 | 73 | 10 | 2 | 20.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_siren | hetalt | 94.9153 | 90.3226 | 100.0000 | 80.7692 | 28 | 3 | 30 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_siren | homalt | 95.6522 | 97.0588 | 94.2857 | 94.7368 | 33 | 1 | 33 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | map_siren | het | 97.9497 | 98.4472 | 97.4573 | 81.1814 | 4438 | 70 | 4446 | 116 | 54 | 46.5517 | |
| egarrison-hhga | INDEL | * | map_siren | hetalt | 84.9102 | 75.3036 | 97.3262 | 88.3489 | 186 | 61 | 182 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | * | map_siren | homalt | 98.7934 | 98.6817 | 98.9052 | 79.7136 | 2620 | 35 | 2620 | 29 | 20 | 68.9655 | |
| egarrison-hhga | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | D16_PLUS | map_siren | * | 81.2950 | 79.0210 | 83.7037 | 88.3520 | 113 | 30 | 113 | 22 | 15 | 68.1818 | |
| egarrison-hhga | INDEL | D16_PLUS | map_siren | het | 86.5700 | 96.1538 | 78.7234 | 89.0698 | 75 | 3 | 74 | 20 | 14 | 70.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_siren | hetalt | 54.6410 | 38.7097 | 92.8571 | 81.8182 | 12 | 19 | 13 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_siren | homalt | 85.2459 | 76.4706 | 96.2963 | 87.8378 | 26 | 8 | 26 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_siren | * | 98.6263 | 98.6682 | 98.5844 | 80.4104 | 3482 | 47 | 3482 | 50 | 22 | 44.0000 | |