PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68701-68750 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.0772 | 96.5750 | 99.6268 | 81.0951 | 4004 | 142 | 4004 | 15 | 7 | 46.6667 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1163 | 94.8582 | 99.4845 | 82.0575 | 2509 | 136 | 2509 | 13 | 6 | 46.1538 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7326 | 99.5995 | 99.8661 | 79.1457 | 1492 | 6 | 1492 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.4252 | 92.3274 | 98.7380 | 54.1740 | 3598 | 299 | 3599 | 46 | 39 | 84.7826 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.8420 | 95.3291 | 98.4036 | 71.9360 | 898 | 44 | 863 | 14 | 8 | 57.1429 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.9357 | 90.3933 | 99.9588 | 34.5998 | 2390 | 254 | 2426 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.0920 | 99.6785 | 90.9091 | 69.4991 | 310 | 1 | 310 | 31 | 30 | 96.7742 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.3801 | 97.1609 | 99.6303 | 75.8203 | 6468 | 189 | 6468 | 24 | 4 | 16.6667 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.5475 | 95.7291 | 99.4363 | 77.3949 | 4057 | 181 | 4057 | 23 | 3 | 13.0435 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.8135 | 99.6690 | 99.9585 | 72.5387 | 2409 | 8 | 2409 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.3306 | 96.7640 | 97.9038 | 49.8941 | 21530 | 720 | 21531 | 461 | 429 | 93.0586 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1121 | 98.7732 | 95.5059 | 60.7561 | 8293 | 103 | 8288 | 390 | 362 | 92.8205 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.5181 | 93.7722 | 99.4296 | 26.3580 | 7664 | 509 | 7670 | 44 | 43 | 97.7273 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8033 | 98.0989 | 99.5179 | 50.4556 | 5573 | 108 | 5573 | 27 | 24 | 88.8889 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.3952 | 94.2799 | 98.6075 | 61.7292 | 7928 | 481 | 7931 | 112 | 102 | 91.0714 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.7863 | 96.9500 | 96.6233 | 75.9515 | 2384 | 75 | 2375 | 83 | 74 | 89.1566 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.7653 | 92.1626 | 99.6610 | 30.6426 | 4398 | 374 | 4410 | 15 | 15 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.0325 | 97.2835 | 98.7931 | 73.7259 | 1146 | 32 | 1146 | 14 | 13 | 92.8571 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 89.0110 | 82.5328 | 96.5928 | 74.6983 | 567 | 120 | 567 | 20 | 17 | 85.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 89.1825 | 84.1463 | 94.8598 | 82.1963 | 207 | 39 | 203 | 11 | 9 | 81.8182 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 88.1439 | 79.2105 | 99.3485 | 55.5072 | 301 | 79 | 305 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 92.9134 | 96.7213 | 89.3939 | 84.5794 | 59 | 2 | 59 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 92.9690 | 88.5553 | 97.8458 | 55.3644 | 3451 | 446 | 3452 | 76 | 71 | 93.4211 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 93.0284 | 92.5690 | 93.4924 | 72.3704 | 872 | 70 | 862 | 60 | 55 | 91.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 92.8925 | 86.9894 | 99.6550 | 36.0629 | 2300 | 344 | 2311 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.3110 | 89.7106 | 97.2125 | 69.4681 | 279 | 32 | 279 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.6468 | 99.5944 | 99.6992 | 79.9741 | 6630 | 27 | 6628 | 20 | 11 | 55.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.6224 | 99.6697 | 99.5753 | 80.0565 | 4224 | 14 | 4220 | 18 | 10 | 55.5556 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4545 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6890 | 99.4621 | 99.9169 | 79.7698 | 2404 | 13 | 2406 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.6260 | 99.6141 | 99.6379 | 82.9126 | 4130 | 16 | 4128 | 15 | 8 | 53.3333 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.5465 | 99.6219 | 99.4711 | 83.1776 | 2635 | 10 | 2633 | 14 | 8 | 57.1429 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7660 | 99.5995 | 99.9330 | 82.3251 | 1492 | 6 | 1492 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 92.0621 | 91.0745 | 93.0713 | 64.3876 | 3704 | 363 | 3694 | 275 | 266 | 96.7273 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 88.6737 | 96.3158 | 82.1551 | 76.7252 | 1281 | 49 | 1197 | 260 | 253 | 97.3077 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 89.8927 | 82.1104 | 99.3046 | 32.2337 | 1354 | 295 | 1428 | 10 | 10 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8899 | 98.2537 | 99.5345 | 61.1292 | 1069 | 19 | 1069 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.6387 | 99.6019 | 99.6756 | 81.2035 | 10758 | 43 | 10754 | 35 | 19 | 54.2857 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.5932 | 99.6513 | 99.5352 | 81.3843 | 6859 | 24 | 6853 | 32 | 18 | 56.2500 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7185 | 99.5147 | 99.9231 | 80.8305 | 3896 | 19 | 3898 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.1130 | 95.4143 | 96.8220 | 50.6721 | 14107 | 678 | 14106 | 463 | 453 | 97.8402 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.6815 | 98.3806 | 91.2505 | 66.8429 | 4374 | 72 | 4349 | 417 | 409 | 98.0815 | |