PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1357 1358 1359 1360 1361 1362 1363 1364 1365 ... 1720 1721 » 68001-68050 / 86044 show all
eyeh-varpipe	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	0.0000	0.0000	60.9756	95.2326	0	0	25	16	12	75.0000
eyeh-varpipe	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	0.0000	0.0000	88.8889	95.9276	0	0	8	1	1	100.0000
eyeh-varpipe	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	0.0000	0.0000	60.0000	96.1240	0	0	6	4	2	50.0000
eyeh-varpipe	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	0.0000	0.0000	50.0000	94.2257	0	0	11	11	9	81.8182
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0697	98.8184	99.3222	69.4679	30775	368	30774	210	73	34.7619
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.8292	98.5239	99.1363	69.4693	19290	289	19284	168	37	22.0238
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	100.0000	100.0000	100.0000	91.4894	12	0	12	0	0
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4755	99.3161	99.6354	69.3829	11473	79	11478	42	36	85.7143
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0424	98.7834	99.3028	71.2490	45146	556	45149	317	104	32.8076
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.7965	98.4954	99.0994	71.1241	28280	432	28279	257	56	21.7899
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	100.0000	100.0000	100.0000	92.7536	15	0	15	0	0
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4570	99.2695	99.6453	71.3824	16851	124	16855	60	48	80.0000
egarrison-hhga	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*		100.0000		100.0000	1	0	0	0	0
egarrison-hhga	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
egarrison-hhga	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	86.8726	86.3602	87.3912	57.0498	27124	4284	27204	3925	3577	91.1338
egarrison-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	87.7692	97.8411	79.5775	59.2240	13460	297	13899	3567	3388	94.9818
egarrison-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	74.9981	60.3703	98.9815	39.2947	5609	3682	5248	54	46	85.1852
egarrison-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.3579	96.3517	96.3641	60.0124	8055	305	8057	304	143	47.0395
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	80.0812	74.2799	86.8654	57.3222	13126	4545	13260	2005	1766	88.0798
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	86.5434	96.4420	78.4876	62.7159	5638	208	6217	1704	1642	96.3615
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	64.3918	47.8099	98.5834	40.4750	3853	4206	3410	49	42	85.7143
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	94.9937	96.5215	93.5135	55.4063	3635	131	3633	252	82	32.5397
egarrison-hhga	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
egarrison-hhga	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
egarrison-hhga	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	80.2083	71.8944	90.6965	69.6512	3594	1405	3646	374	325	86.8984
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	87.0530	88.5102	85.6431	75.6731	1610	209	1718	288	261	90.6250
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	59.9599	42.9829	99.1026	48.8525	830	1101	773	7	6	85.7143
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	92.9921	92.3939	93.5981	64.4892	1154	95	1155	79	58	73.4177
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	88.6605	87.9344	89.3987	86.9048	57466	7885	57984	6876	6009	87.3909
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	89.6104	96.3123	83.7805	65.9807	29356	1124	30414	5888	5443	92.4423
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	77.6152	64.0108	98.5632	45.9265	10693	6012	10153	148	131	88.5135
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.6374	95.8769	95.3990	63.4546	17417	749	17417	840	435	51.7857
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	86.0678	81.0458	91.7533	79.3558	1240	290	1235	111	68	61.2613
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	88.5339	85.2853	92.0398	83.8251	568	98	555	48	27	56.2500
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	85.2201	76.0243	96.9466	64.6900	501	158	508	16	13	81.2500
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	80.9033	83.4146	78.5388	83.2569	171	34	172	47	28	59.5745
egarrison-hhga	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt		0.0000		100.0000	0	0	0	0	0
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	81.0523	77.6490	84.7677	58.0295	24388	7020	25176	4524	4294	94.9160
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	95.0193	92.3530	97.8441	60.3645	12705	1052	12662	279	130	46.5950
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	52.9384	36.4654	96.5577	59.1585	3388	5903	3899	139	129	92.8058
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	80.5008	99.2225	67.7227	54.9332	8295	65	8615	4106	4035	98.2708
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	77.4599	71.6987	84.2278	56.4520	11527	4550	21313	3991	3815	95.5901
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	92.9543	91.5421	94.4108	58.8410	5877	543	11520	682	569	83.4311

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge