PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
67951-68000 / 86044 show all
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
89.7782
82.5984
98.3250
32.1288
4870102649318471
84.5238
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
87.7042
78.9949
98.5719
61.4567
297179029684328
65.1163
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.5384
98.0960
98.9848
61.0949
3081059830810316292
92.4051
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.0981
99.2004
98.9959
68.2271
1364711013606138117
84.7826
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.1571
94.8660
99.5615
32.7282
881447788553937
94.8718
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.1097
99.8684
98.3624
63.9223
8349118349139138
99.2806
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.4424
99.5121
99.3729
70.5814
454792234547928731
10.8014
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.2336
99.4427
99.0254
72.4471
285521602855228126
9.2527
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
87.5000
1501500
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7964
99.6289
99.9645
66.6982
16912631691265
83.3333
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.4591
99.4895
99.4288
67.6195
309841593098417819
10.6742
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.2708
99.4280
99.1141
69.5332
194671121946717416
9.1954
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
84.4156
1201200
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7788
99.5931
99.9652
63.6860
11505471150543
75.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.4073
99.5608
99.2542
75.3973
14507641450710912
11.0092
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.1542
99.4744
98.8359
77.1224
908548908510710
9.3458
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
87.5000
1501500
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8338
99.7050
99.9630
71.6940
540716540722
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.4939
96.6013
98.4032
85.1394
14785214792416
66.6667
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.7049
96.8468
98.5782
88.2123
6452162493
33.3333
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.4450
95.2959
99.6933
71.1249
6283165022
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.9267
100.0000
94.0367
91.2309
20502051311
84.6154
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.4673
97.4995
99.4544
67.8523
15675402156768670
81.3953
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.0909
98.7850
99.3987
76.0252
63427862823824
63.1579
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.3638
94.8948
99.9647
39.6673
5595301565622
100.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.0855
99.3885
98.7844
71.5296
37382337384644
95.6522
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.8137
96.5992
99.0592
63.6797
610721561075848
82.7586
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6653
98.1228
99.2138
75.9182
1934371893157
46.6667
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.3835
94.9801
99.9116
43.2609
3349177339033
100.0000
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.5725
99.8788
95.3704
71.8658
82418244038
95.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.6405
97.3120
97.9712
57.8582
1719647517191356338
94.9438
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.9716
99.0079
96.9569
71.5543
5788585735180166
92.2222
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.1244
94.8753
99.4828
30.2426
764641376944038
95.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.1733
99.8938
96.5110
60.0492
376243762136134
98.5294
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.0336
96.1684
97.9144
65.7408
1546161615446329175
53.1915
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.1627
97.3832
96.9432
73.2443
6252168621619667
34.1837
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.7392
94.5387
99.0446
39.1669
557432255985450
92.5926
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.2567
96.6498
97.8712
70.9851
363512636327958
73.4177
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9850
98.7098
99.2618
74.4815
143831881438710731
28.9720
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.7264
98.4342
99.0203
74.1270
899014389958919
21.3483
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
92.7536
1501500
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.4177
99.1702
99.6664
74.8848
53784553771812
66.6667
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
75.9304
73.7693
78.2218
69.0738
4820917142620081726416584
96.0612
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
89.1102
86.0761
92.3660
60.6253
2623642443315227402400
87.5912
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
48.1230
32.2658
94.6289
66.5252
5390113157611432407
94.2130
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
72.4961
91.2859
60.1211
52.5391
165831583212451409213777
97.7647
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
93.4915
90.6675
96.4971
60.4318
57325905730208164
78.8462
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.0820
92.6941
95.5121
71.6510
182714418098558
68.2353
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
93.5628
88.9960
98.6237
42.7471
313838831534440
90.9091
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
91.8070
92.9697
90.6730
69.1101
767587687966
83.5443